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mmu_circIno80_2369
Basic information of circular RNA
PanCircBase ID:
mmu_circIno80_2369
mm39_Chr. Position ID:
chr2|119232810|119276137|-
Gene name:
Ino80
Transcript:
ENSMUST00000049920.14
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
19
Exon/intron indexes:
28,27,26,25,24,23,22,21,20,19,18,17,16,15,14,13,12,11,10
Exon/intron offsets:
0,4486,10072,15991,21275,22929,23375,24259,24570,26147,28658,29598,30861,31819,37045,39283,40053,42117,43131
Genomic length:
43327
Exon/intron sizes in nt:
9,51,28,22,61,41,17,29,00,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr2:119223406-119232810|chr2:119276137-119277336
Splice length:
2369
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GCCAAGAGGCAACAACGAAAACTCAACTTCTTAATCACTCAGACAGAATTGTATGCTCATTTTATGAGTCGAAAACGTGATATGGGTCATGATGGAATCCAGGAAGAAATCTTAAGGAAACTAGAAGATAGTTCTACCCAGAGACAAATTGACATTGGTGGAGGAGTGGTGGTTAACATCACCCAAGAAGACTATGATAGTAACCATTTTAAAGCCCAGGCCCTGAAGAATGCTGAAAATGCTTATCATATTCACCAAGCTCGAACAAGGTCATTTGATGAAGATGCAAAAGAAAGTCGGGCAGCTGCCCTTAGGGCAGCAGACAAGTCTGGCTCTGGGTTTGGGGAGAGTTATAGCTTAGCAAATCCATCTATCCGGGCCGGTGAGGATATTCCGCAACCCACTATTTTCAATGGCAAGTTGAAAGGTTACCAGCTGAAAGGCATGAACTGGTTAGCAAATTTATATGAACAGGGTATTAATGGAATTCTTGCTGATGAAATGGGTCTTGGTAAAACTGTACAGAGCATTGCCCTCCTGGCCCATCTGGCTGAGAGAGAAAACATTTGGGGACCTTTCTTAATAATTTCACCTGCTTCTACACTTAATAATTGGCACCAGGAGTTTACAAGATTTGTTCCTAAATTTAAGGTGCTACCATATTGGGGAAATCCTCATGATAGAAAAGTTATCCGGAGATTCTGGAGTCAGAAGACCTTATATACTCAGGATGCCCCCTTTCATGTGGTCATCACTAGCTACCAGCTGGTGGTTCAGGATGTCAAGTACTTCCAGCGGGTCAAGTGGCAATACATGGTACTGGATGAAGCTCAGGCACTGAAGAGCAGTTCCAGTGTTCGTTGGAAGATTCTCTTACAATTCCAGTGTCGAAATCGACTTTTGTTAACTGGAACCCCCATTCAGAATACCATGGCAGAGCTCTGGGCTCTGCTACATTTCATTATGCCAACATTATTTGATTCGCATGAAGAATTTAATGAATGGTTTTCCAAAGACATTGAAAGTCATGCTGAAAACAAATCTGCTATTGATGAGAATCAACTCTCTCGTTTACACATGATCTTGAAACCATTTATGCTGAGAAGAATCAAAAAAGATGTAGAAAATGAATTGTCTGACAAGATTGAGATTCTAACGTACTGCCAATTGACCAGTCGACAAAAACTCTTATATCAGGCACTAAAGAATAAAATTTCCATTGAGGACTTACTGCAGTCTTCAATGGGCTCCACACAACAAGCACAGAACACCACCAGCAGCCTCATGAATTTAGTCATGCAATTCAGGAAGGTGTGTAATCACCCAGAGTTATTCGAACGGCAAGAAACGTGGTCTCCATTTCATATTTCTCTAAAGCCATATGAAATTTCGAAGTTTATTTATCGTCATGGACAGATCAGGGTCTTCAACCACTCACGAGATAGGTGGTTGAAGGTTCTTCTCTCTCCGTTTGCACCAGATTATATCCAGCAGTCTCTCTTCCATAGGAAAGGTATTAATGAAGGAAGCTGTTTTTCTTTCCTTCGATTTATTGATGTCTCGCCAGCAGAAATGGCAAACCTCATGCTTCAGGGACTTTTGGCCAGGTGGTTAGCTCTTTTCCTATCTCTGAAAGCCTCCTACAGGCTCCACCAGCTGCGCTCTTGGGCAGAGCCGGATGGGACAAGCCATCAGAGCTATCTGAGAAACAAGGATTTTCTTCTCGGAGTTGATTTCCCACTTTCCTTCCCTAACCTTTGCAGCTGCCCTTTGTTAAAGTCTCTTGTTTTCAGCAGCCACTGTAAAGCAGTGAGTGGCTACTCAGACCATGTTGTCCATCAGCGGAGATCAGCTACCTCCTCACTTCGTTGCTGCCTCCTCACTGAGCTGCCGTCTTTTTTGTGTGTGGCCAGTCCACGAGTCACCGCAGTGCCGTTGGATTCTTACTGTAATGACAGAAGTGCAGAGTATGAGAGAGGAGTTCTGAAGGAAGGAGGGAGTCTGGCTGCCAAGCAGTGTTTGTTGAATGGGGCTCCTGAGCTGGCTACGGATTGGCTGAGTCGCAGATCCCAGTTCTTCCCAGAGCCAGCTGGAGGGCTGCTGAGCATTAGACCCCAGAACGGCTGGTCTTTCATCAGAATTCCAGGCAAGGAGAGCCTCATCACTGACAGTGGAAAGCTGTATGCCCTTGATGTCCTGTTGACTCGGCTCAAGTCTCAAGGACATAGGGTCCTTATCTACTCTCAGATGACCAGAATGATAGACCTGCTGGAGGAATATATGGTATACAGGAAGCATACCTACATGAGGCTGGATGGCTCGTCCAAGATCTCAGAGAGACGGGACATGGTGGCTGATTTTCAGACCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCTACATGAGGCTGGATGGC
60.25
TCCATCATGACCCATATCACGT
59.03
166
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCTACATGAGGCTGGATGGC
60.25
TCCATCATGACCCATATCACGTT
59.61
166
PCR template sequence:
TGGAGGAATATATGGTATACAGGAAGCATACCTACATGAGGCTGGATGGCTCGTCCAAGATCTCAGAGAGACGGGACATGGTGGCTGATTTTCAGACCAGGCCAAGAGGCAACAACGAAAACTCAACTTCTTAATCACTCAGACAGAATTGTATGCTCATTTTATGAGTCGAAAACGTGATATGGGTCATGATGGAATCC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
26
Interacting miRNAs (#binding sites)
mmu-miR-135a-5p(2), mmu-miR-203-3p(2), mmu-miR-138-5p(2), mmu-miR-185-5p(2), mmu-miR-140-5p(1), mmu-let-7a-5p(1), mmu-miR-200a-3p(1), mmu-miR-141-3p(1), mmu-miR-32-5p(1), mmu-miR-103-3p(1), mmu-let-7b-5p(1), mmu-let-7c-5p(1), mmu-miR-7a-5p(1), mmu-miR-709(1), mmu-miR-10b-5p(1), mmu-miR-10a-5p(1), mmu-miR-495-3p(1), mmu-let-7d-5p(1), mmu-miR-511-3p(1), mmu-miR-362-5p(1), mmu-miR-107-3p(1), mmu-miR-29b-2-5p(1), mmu-miR-3065-5p(1), mmu-miR-670-5p(1), mmu-miR-697(1), mmu-miR-193b-3p(1)
siRNAs for circular RNA silencing
Junction sequence
ATTTTCAGACCAGGCCAAGAGGCAAC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCINO80_2369_ORF_1
0.7637
0.096073899
0.9999984
2340
ORF sequence:
ATGAGTCGAAAACGTGATATGGGTCATGATGGAATCCAGGAAGAAATCTTAAGGAAACTAGAAGATAGTTCTACCCAGAGACAAATTGACATTGGTGGAGGAGTGGTGGTTAACATCACCCAAGAAGACTATGATAGTAACCATTTTAAAGCCCAGGCCCTGAAGAATGCTGAAAATGCTTATCATATTCACCAAGCTCGAACAAGGTCATTTGATGAAGATGCAAAAGAAAGTCGGGCAGCTGCCCTTAGGGCAGCAGACAAGTCTGGCTCTGGGTTTGGGGAGAGTTATAGCTTAGCAAATCCATCTATCCGGGCCGGTGAGGATATTCCGCAACCCACTATTTTCAATGGCAAGTTGAAAGGTTACCAGCTGAAAGGCATGAACTGGTTAGCAAATTTATATGAACAGGGTATTAATGGAATTCTTGCTGATGAAATGGGTCTTGGTAAAACTGTACAGAGCATTGCCCTCCTGGCCCATCTGGCTGAGAGAGAAAACATTTGGGGACCTTTCTTAATAATTTCACCTGCTTCTACACTTAATAATTGGCACCAGGAGTTTACAAGATTTGTTCCTAAATTTAAGGTGCTACCATATTGGGGAAATCCTCATGATAGAAAAGTTATCCGGAGATTCTGGAGTCAGAAGACCTTATATACTCAGGATGCCCCCTTTCATGTGGTCATCACTAGCTACCAGCTGGTGGTTCAGGATGTCAAGTACTTCCAGCGGGTCAAGTGGCAATACATGGTACTGGATGAAGCTCAGGCACTGAAGAGCAGTTCCAGTGTTCGTTGGAAGATTCTCTTACAATTCCAGTGTCGAAATCGACTTTTGTTAACTGGAACCCCCATTCAGAATACCATGGCAGAGCTCTGGGCTCTGCTACATTTCATTATGCCAACATTATTTGATTCGCATGAAGAATTTAATGAATGGTTTTCCAAAGACATTGAAAGTCATGCTGAAAACAAATCTGCTATTGATGAGAATCAACTCTCTCGTTTACACATGATCTTGAAACCATTTATGCTGAGAAGAATCAAAAAAGATGTAGAAAATGAATTGTCTGACAAGATTGAGATTCTAACGTACTGCCAATTGACCAGTCGACAAAAACTCTTATATCAGGCACTAAAGAATAAAATTTCCATTGAGGACTTACTGCAGTCTTCAATGGGCTCCACACAACAAGCACAGAACACCACCAGCAGCCTCATGAATTTAGTCATGCAATTCAGGAAGGTGTGTAATCACCCAGAGTTATTCGAACGGCAAGAAACGTGGTCTCCATTTCATATTTCTCTAAAGCCATATGAAATTTCGAAGTTTATTTATCGTCATGGACAGATCAGGGTCTTCAACCACTCACGAGATAGGTGGTTGAAGGTTCTTCTCTCTCCGTTTGCACCAGATTATATCCAGCAGTCTCTCTTCCATAGGAAAGGTATTAATGAAGGAAGCTGTTTTTCTTTCCTTCGATTTATTGATGTCTCGCCAGCAGAAATGGCAAACCTCATGCTTCAGGGACTTTTGGCCAGGTGGTTAGCTCTTTTCCTATCTCTGAAAGCCTCCTACAGGCTCCACCAGCTGCGCTCTTGGGCAGAGCCGGATGGGACAAGCCATCAGAGCTATCTGAGAAACAAGGATTTTCTTCTCGGAGTTGATTTCCCACTTTCCTTCCCTAACCTTTGCAGCTGCCCTTTGTTAAAGTCTCTTGTTTTCAGCAGCCACTGTAAAGCAGTGAGTGGCTACTCAGACCATGTTGTCCATCAGCGGAGATCAGCTACCTCCTCACTTCGTTGCTGCCTCCTCACTGAGCTGCCGTCTTTTTTGTGTGTGGCCAGTCCACGAGTCACCGCAGTGCCGTTGGATTCTTACTGTAATGACAGAAGTGCAGAGTATGAGAGAGGAGTTCTGAAGGAAGGAGGGAGTCTGGCTGCCAAGCAGTGTTTGTTGAATGGGGCTCCTGAGCTGGCTACGGATTGGCTGAGTCGCAGATCCCAGTTCTTCCCAGAGCCAGCTGGAGGGCTGCTGAGCATTAGACCCCAGAACGGCTGGTCTTTCATCAGAATTCCAGGCAAGGAGAGCCTCATCACTGACAGTGGAAAGCTGTATGCCCTTGATGTCCTGTTGACTCGGCTCAAGTCTCAAGGACATAGGGTCCTTATCTACTCTCAGATGACCAGAATGATAGACCTGCTGGAGGAATATATGGTATACAGGAAGCATACCTACATGAGGCTGGATGGCTCGTCCAAGATCTCAGAGAGACGGGACATGGTGGCTGATTTTCAGACCAGGCCAAGAGGCAACAACGAAAACTCAACTTCTTAA
Peptide sequence:
MSRKRDMGHDGIQEEILRKLEDSSTQRQIDIGGGVVVNITQEDYDSNHFKAQALKNAENAYHIHQARTRSFDEDAKESRAAALRAADKSGSGFGESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILTYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQETWSPFHISLKPYEISKFIYRHGQIRVFNHSRDRWLKVLLSPFAPDYIQQSLFHRKGINEGSCFSFLRFIDVSPAEMANLMLQGLLARWLALFLSLKASYRLHQLRSWAEPDGTSHQSYLRNKDFLLGVDFPLSFPNLCSCPLLKSLVFSSHCKAVSGYSDHVVHQRRSATSSLRCCLLTELPSFLCVASPRVTAVPLDSYCNDRSAEYERGVLKEGGSLAAKQCLLNGAPELATDWLSRRSQFFPEPAGGLLSIRPQNGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQTRPRGNNENSTS
IRESfinder result
IRESfinder score
0.656375491
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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