top of page
mmu_circIno80_1143
Basic information of circular RNA
PanCircBase ID:
mmu_circIno80_1143
mm39_Chr. Position ID:
chr2|119262408|119277540|-
Gene name:
Ino80
Transcript:
ENSMUST00000049920.14
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
9
Exon/intron indexes:
17,16,15,14,13,12,11,10,9
Exon/intron offsets:
0,1263,2221,7447,9685,10455,12519,13533,14928
Genomic length:
15132
Exon/intron sizes in nt:
8,51,43,60,96,81,21,06,00,00,000
Flanking exon/introns:
chr2:119261586-119262408|chr2:119277540-119278685
Splice length:
1143
Other database IDs:
circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_14178
Human Ortholog IDs:
Mature spliced Sequence:
CTTGCCCATCAATGCATGAAGGAGGTGCGTCGAGCTGCTTTGCAAGCACAGAAAAACTGTAAGGAGACTCTGCCTCGAGCCCGGCGCCTAACAAAAGAGATGCTTCTGTACTGGAAGAAGTATGAGAAGGTGGAGAAGGAGCACCGCAAGCGAGCAGAGAAGGAAGCTCTGGAGCAGCGCAAGTTGGATGAGGAAATGCGGGAGGCCAAGAGGCAACAACGAAAACTCAACTTCTTAATCACTCAGACAGAATTGTATGCTCATTTTATGAGTCGAAAACGTGATATGGGTCATGATGGAATCCAGGAAGAAATCTTAAGGAAACTAGAAGATAGTTCTACCCAGAGACAAATTGACATTGGTGGAGGAGTGGTGGTTAACATCACCCAAGAAGACTATGATAGTAACCATTTTAAAGCCCAGGCCCTGAAGAATGCTGAAAATGCTTATCATATTCACCAAGCTCGAACAAGGTCATTTGATGAAGATGCAAAAGAAAGTCGGGCAGCTGCCCTTAGGGCAGCAGACAAGTCTGGCTCTGGGTTTGGGGAGAGTTATAGCTTAGCAAATCCATCTATCCGGGCCGGTGAGGATATTCCGCAACCCACTATTTTCAATGGCAAGTTGAAAGGTTACCAGCTGAAAGGCATGAACTGGTTAGCAAATTTATATGAACAGGGTATTAATGGAATTCTTGCTGATGAAATGGGTCTTGGTAAAACTGTACAGAGCATTGCCCTCCTGGCCCATCTGGCTGAGAGAGAAAACATTTGGGGACCTTTCTTAATAATTTCACCTGCTTCTACACTTAATAATTGGCACCAGGAGTTTACAAGATTTGTTCCTAAATTTAAGGTGCTACCATATTGGGGAAATCCTCATGATAGAAAAGTTATCCGGAGATTCTGGAGTCAGAAGACCTTATATACTCAGGATGCCCCCTTTCATGTGGTCATCACTAGCTACCAGCTGGTGGTTCAGGATGTCAAGTACTTCCAGCGGGTCAAGTGGCAATACATGGTACTGGATGAAGCTCAGGCACTGAAGAGCAGTTCCAGTGTTCGTTGGAAGATTCTCTTACAATTCCAGTGTCGAAATCGACTTTTGTTAACTGGAACCCCCATTCAGAATACCATGGCAGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCAGTTCCAGTGTTCGTTGG
59.69
TCGAGGCAGAGTCTCCTTACA
60
173
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCAGTTCCAGTGTTCGTTGG
59.69
CTTGCAAAGCAGCTCGACG
60.15
141
PCR template sequence:
GAAGAGCAGTTCCAGTGTTCGTTGGAAGATTCTCTTACAATTCCAGTGTCGAAATCGACTTTTGTTAACTGGAACCCCCATTCAGAATACCATGGCAGAGCTTGCCCATCAATGCATGAAGGAGGTGCGTCGAGCTGCTTTGCAAGCACAGAAAAACTGTAAGGAGACTCTGCCTCGAGCCCGGCGCCTAACAAAAGAGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
8
Interacting miRNAs (#binding sites)
mmu-miR-103-3p(1), mmu-miR-709(1), mmu-miR-10b-5p(1), mmu-miR-10a-5p(1), mmu-miR-218-5p(1), mmu-miR-107-3p(1), mmu-miR-207(1), mmu-miR-697(1)
siRNAs for circular RNA silencing
Junction sequence
TACCATGGCAGAGCTTGCCCATCAAT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCINO80_1143_ORF_1
1.1202
0.216267546
0.999999216
2271
ORF sequence:
ATGAAGGAGGTGCGTCGAGCTGCTTTGCAAGCACAGAAAAACTGTAAGGAGACTCTGCCTCGAGCCCGGCGCCTAACAAAAGAGATGCTTCTGTACTGGAAGAAGTATGAGAAGGTGGAGAAGGAGCACCGCAAGCGAGCAGAGAAGGAAGCTCTGGAGCAGCGCAAGTTGGATGAGGAAATGCGGGAGGCCAAGAGGCAACAACGAAAACTCAACTTCTTAATCACTCAGACAGAATTGTATGCTCATTTTATGAGTCGAAAACGTGATATGGGTCATGATGGAATCCAGGAAGAAATCTTAAGGAAACTAGAAGATAGTTCTACCCAGAGACAAATTGACATTGGTGGAGGAGTGGTGGTTAACATCACCCAAGAAGACTATGATAGTAACCATTTTAAAGCCCAGGCCCTGAAGAATGCTGAAAATGCTTATCATATTCACCAAGCTCGAACAAGGTCATTTGATGAAGATGCAAAAGAAAGTCGGGCAGCTGCCCTTAGGGCAGCAGACAAGTCTGGCTCTGGGTTTGGGGAGAGTTATAGCTTAGCAAATCCATCTATCCGGGCCGGTGAGGATATTCCGCAACCCACTATTTTCAATGGCAAGTTGAAAGGTTACCAGCTGAAAGGCATGAACTGGTTAGCAAATTTATATGAACAGGGTATTAATGGAATTCTTGCTGATGAAATGGGTCTTGGTAAAACTGTACAGAGCATTGCCCTCCTGGCCCATCTGGCTGAGAGAGAAAACATTTGGGGACCTTTCTTAATAATTTCACCTGCTTCTACACTTAATAATTGGCACCAGGAGTTTACAAGATTTGTTCCTAAATTTAAGGTGCTACCATATTGGGGAAATCCTCATGATAGAAAAGTTATCCGGAGATTCTGGAGTCAGAAGACCTTATATACTCAGGATGCCCCCTTTCATGTGGTCATCACTAGCTACCAGCTGGTGGTTCAGGATGTCAAGTACTTCCAGCGGGTCAAGTGGCAATACATGGTACTGGATGAAGCTCAGGCACTGAAGAGCAGTTCCAGTGTTCGTTGGAAGATTCTCTTACAATTCCAGTGTCGAAATCGACTTTTGTTAACTGGAACCCCCATTCAGAATACCATGGCAGAGCTTGCCCATCAATGCATGAAGGAGGTGCGTCGAGCTGCTTTGCAAGCACAGAAAAACTGTAAGGAGACTCTGCCTCGAGCCCGGCGCCTAACAAAAGAGATGCTTCTGTACTGGAAGAAGTATGAGAAGGTGGAGAAGGAGCACCGCAAGCGAGCAGAGAAGGAAGCTCTGGAGCAGCGCAAGTTGGATGAGGAAATGCGGGAGGCCAAGAGGCAACAACGAAAACTCAACTTCTTAATCACTCAGACAGAATTGTATGCTCATTTTATGAGTCGAAAACGTGATATGGGTCATGATGGAATCCAGGAAGAAATCTTAAGGAAACTAGAAGATAGTTCTACCCAGAGACAAATTGACATTGGTGGAGGAGTGGTGGTTAACATCACCCAAGAAGACTATGATAGTAACCATTTTAAAGCCCAGGCCCTGAAGAATGCTGAAAATGCTTATCATATTCACCAAGCTCGAACAAGGTCATTTGATGAAGATGCAAAAGAAAGTCGGGCAGCTGCCCTTAGGGCAGCAGACAAGTCTGGCTCTGGGTTTGGGGAGAGTTATAGCTTAGCAAATCCATCTATCCGGGCCGGTGAGGATATTCCGCAACCCACTATTTTCAATGGCAAGTTGAAAGGTTACCAGCTGAAAGGCATGAACTGGTTAGCAAATTTATATGAACAGGGTATTAATGGAATTCTTGCTGATGAAATGGGTCTTGGTAAAACTGTACAGAGCATTGCCCTCCTGGCCCATCTGGCTGAGAGAGAAAACATTTGGGGACCTTTCTTAATAATTTCACCTGCTTCTACACTTAATAATTGGCACCAGGAGTTTACAAGATTTGTTCCTAAATTTAAGGTGCTACCATATTGGGGAAATCCTCATGATAGAAAAGTTATCCGGAGATTCTGGAGTCAGAAGACCTTATATACTCAGGATGCCCCCTTTCATGTGGTCATCACTAGCTACCAGCTGGTGGTTCAGGATGTCAAGTACTTCCAGCGGGTCAAGTGGCAATACATGGTACTGGATGAAGCTCAGGCACTGAAGAGCAGTTCCAGTGTTCGTTGGAAGATTCTCTTACAATTCCAGTGTCGAAATCGACTTTTGTTAACTGGAACCCCCATTCAGAATACCATGGCAGAG
Peptide sequence:
MKEVRRAALQAQKNCKETLPRARRLTKEMLLYWKKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQRKLNFLITQTELYAHFMSRKRDMGHDGIQEEILRKLEDSSTQRQIDIGGGVVVNITQEDYDSNHFKAQALKNAENAYHIHQARTRSFDEDAKESRAAALRAADKSGSGFGESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELAHQCMKEVRRAALQAQKNCKETLPRARRLTKEMLLYWKKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQRKLNFLITQTELYAHFMSRKRDMGHDGIQEEILRKLEDSSTQRQIDIGGGVVVNITQEDYDSNHFKAQALKNAENAYHIHQARTRSFDEDAKESRAAALRAADKSGSGFGESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAE
IRESfinder result
IRESfinder score
0.525832562
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page