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mmu_circIgf2r_1880
Basic information of circular RNA
PanCircBase ID:
mmu_circIgf2r_1880
mm39_Chr. Position ID:
chr17|12928265|12944305|-
Gene name:
Igf2r
Transcript:
ENSMUST00000024599.14
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
13
Exon/intron indexes:
22,21,20,19,18,17,16,15,14,13,12,11,10
Exon/intron offsets:
0,1258,2640,4582,5494,5999,6494,7190,7894,9273,10434,12749,15936
Genomic length:
16040
Exon/intron sizes in nt:
19,61,05,10,21,80,16,90,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr17:12924739-12928265|chr17:12944305-12945076
Splice length:
1880
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTACTCAGATGGAGACCTCACCCTCATCTATTCTGGAGGTGATGAGTGTAGCTCTGGCTTCCAGAGGATGAGTGTCATAAACTTTGAGTGCAACAAAACTGCAGGTAAGGATGGGAGAGGAGAGCCTGTGTTCACAGGTGAGGTGGACTGCACCTACTTCTTCACATGGGACACTAAATACGCCTGCATCAAAGAGAAGGAAGACCTCCTCTGCGGGGCCATCAATGGCAAGAAACGCTATGACCTGTCTGTGTTGGCTCGTCACTCAGAATCAGAACAGAATTGGGAAGCAGTGGATGGCAGCCAGGCAGAATCAGAAAAGTATTTCTTCATCAACGTCTGTCACCGGGTGCTGCAGGAGGGGAAGGCCAGGAACTGTCCTGAAGATGCTGCTGTGTGCGCTGTGGATAAGAATGGGAGTAAAAACCTTGGAAAATTTGTCTCTTCTCCTACAAAAGAGAAAGGACACATACAGCTCTCTTACACTGATGGTGATGACTGTGGCAGTGATAAGAAAATATCAACTAACATCACACTTGTGTGCAAACCAGGTGATCTAGAAAGTGCTCCAGTGCTAAGAGCTGCAAGATCTGATGGCTGCTTCTATGAGTTTGAGTGGCATACGGCTGCTGCCTGTGTACTGTCGAAGACAGAAGGAGAGAACTGCACGGTCCTTGATGCCCAGGCAGGGTTTTCCTTTGATTTGTCACTCCTCACGAAGAAGAATGGTGCATATAAAGTTGAGACAGAGAAGTATGACTTCTACATAAATGTTTGTGGCCCTGTATCCATGGATCCTTGTCAGTCAAACTCGGGGGCCTGCCAGGTAGCGAAAAGTGGTAAGTCTTGGAACTTGGGGCTGAGTAGTACTAAGCTCACCTACTACGACGGAATGATCCAGCTGAGCTACAGGAACGGCACTCCCTATAACAATGAAAAGCACACACCGAGAGCCACACTGATTACCTTCCTCTGTGACCGTGACGCTGGAGTGGGCTTCCCAGAATATCAGGAAGAGGACAACTCTACCTACAACTTCCGGTGGTACACCAGTTATGCCTGCCCAGAAGAACCCCTGGAGTGCATGGTGACAGACCCCTCCATGATGGAACAGTATGACCTCTCCAGTCTAGTGAAGTCTGAAGGTGGCTCTGGAGGAAACTGGTATGCTATGGAAAACTCCCGGGAACATGTTACACGGAGGAAATACTACCTCAATGTGTGTCGGCCTCTGAATCCTGTGCCAGGCTGCGATCGATATGCATCTGCTTGCCAGATGAAATATGAAAATCATGAGGGCTCCTTGGCAGAGACTGTATCCATCAGTAACTTGGGAGTTGCAAAGATAGGCCCTGTGGTGGAGGAGAGTGGCAGCCTCCTCTTAGAGTATGTGAACGGCTCTGCTTGCACCACCAGTGATGGCCAGCTCACCACCTACAGCACCAGGATCCATCTTGTCTGTGGTCGAGGATTTATGAACTCCCATCCCATATTCACTTTCAACTGGGAATGTGTGGTCAGTTTCTTGTGGAACACGGAGGCTGCCTGCCCTATCCAGACAATCACAGAAACAGACCAGGCTTGCTCAATAAGGGACCCCAGCAGTGGGTTTGTGTTTAATCTTAGCCCACTCAACGATTCTGCTCAAGGACATGTGGTCTTAGGCATCGGAAAGACTTTTGTGTTCAATATCTGTGGTGCAATGCCTGCCTGTGGAACGGTTGCGGGGAAGCCAGCCTATGGCTGCGAGGCCGAAACTCAGATAGAAGATATTAAGGACCTAAGGCCACAAAGGCCGGTCGGGATGGAGAGGAGCCTCCAGTTGTCTGCCGAGGGATTCCTCACTCTGACCTACAAGGGCTCTTCTCCCTCTGACAGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGAGGAGCCTCCAGTTGTCT
59.88
CACTCATCCTCTGGAAGCCA
59.09
146
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGAGGAGCCTCCAGTTGTCT
59.88
ACACTCATCCTCTGGAAGCC
59.09
147
PCR template sequence:
CTAAGGCCACAAAGGCCGGTCGGGATGGAGAGGAGCCTCCAGTTGTCTGCCGAGGGATTCCTCACTCTGACCTACAAGGGCTCTTCTCCCTCTGACAGAGGTACTCAGATGGAGACCTCACCCTCATCTATTCTGGAGGTGATGAGTGTAGCTCTGGCTTCCAGAGGATGAGTGTCATAAACTTTGAGTGCAACAAAACT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
21
Interacting miRNAs (#binding sites)
mmu-miR-335-3p(2), mmu-let-7a-5p(1), mmu-miR-103-3p(1), mmu-let-7b-5p(1), mmu-let-7c-5p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-298-5p(1), mmu-let-7d-5p(1), mmu-miR-29b-1-5p(1), mmu-miR-96-5p(1), mmu-miR-382-5p(1), mmu-miR-324-3p(1), mmu-miR-297a-5p(1), mmu-miR-107-3p(1), mmu-miR-98-5p(1), mmu-miR-325-3p(1), mmu-miR-484(1), mmu-miR-452-3p(1), mmu-miR-540-3p(1), mmu-miR-193b-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CCCTCTGACAGAGGTACTCAGATGGA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCIGF2R_1880_ORF_1
0.9381
0.231350259
0.99998253
1884
ORF sequence:
ATGAGTGTCATAAACTTTGAGTGCAACAAAACTGCAGGTAAGGATGGGAGAGGAGAGCCTGTGTTCACAGGTGAGGTGGACTGCACCTACTTCTTCACATGGGACACTAAATACGCCTGCATCAAAGAGAAGGAAGACCTCCTCTGCGGGGCCATCAATGGCAAGAAACGCTATGACCTGTCTGTGTTGGCTCGTCACTCAGAATCAGAACAGAATTGGGAAGCAGTGGATGGCAGCCAGGCAGAATCAGAAAAGTATTTCTTCATCAACGTCTGTCACCGGGTGCTGCAGGAGGGGAAGGCCAGGAACTGTCCTGAAGATGCTGCTGTGTGCGCTGTGGATAAGAATGGGAGTAAAAACCTTGGAAAATTTGTCTCTTCTCCTACAAAAGAGAAAGGACACATACAGCTCTCTTACACTGATGGTGATGACTGTGGCAGTGATAAGAAAATATCAACTAACATCACACTTGTGTGCAAACCAGGTGATCTAGAAAGTGCTCCAGTGCTAAGAGCTGCAAGATCTGATGGCTGCTTCTATGAGTTTGAGTGGCATACGGCTGCTGCCTGTGTACTGTCGAAGACAGAAGGAGAGAACTGCACGGTCCTTGATGCCCAGGCAGGGTTTTCCTTTGATTTGTCACTCCTCACGAAGAAGAATGGTGCATATAAAGTTGAGACAGAGAAGTATGACTTCTACATAAATGTTTGTGGCCCTGTATCCATGGATCCTTGTCAGTCAAACTCGGGGGCCTGCCAGGTAGCGAAAAGTGGTAAGTCTTGGAACTTGGGGCTGAGTAGTACTAAGCTCACCTACTACGACGGAATGATCCAGCTGAGCTACAGGAACGGCACTCCCTATAACAATGAAAAGCACACACCGAGAGCCACACTGATTACCTTCCTCTGTGACCGTGACGCTGGAGTGGGCTTCCCAGAATATCAGGAAGAGGACAACTCTACCTACAACTTCCGGTGGTACACCAGTTATGCCTGCCCAGAAGAACCCCTGGAGTGCATGGTGACAGACCCCTCCATGATGGAACAGTATGACCTCTCCAGTCTAGTGAAGTCTGAAGGTGGCTCTGGAGGAAACTGGTATGCTATGGAAAACTCCCGGGAACATGTTACACGGAGGAAATACTACCTCAATGTGTGTCGGCCTCTGAATCCTGTGCCAGGCTGCGATCGATATGCATCTGCTTGCCAGATGAAATATGAAAATCATGAGGGCTCCTTGGCAGAGACTGTATCCATCAGTAACTTGGGAGTTGCAAAGATAGGCCCTGTGGTGGAGGAGAGTGGCAGCCTCCTCTTAGAGTATGTGAACGGCTCTGCTTGCACCACCAGTGATGGCCAGCTCACCACCTACAGCACCAGGATCCATCTTGTCTGTGGTCGAGGATTTATGAACTCCCATCCCATATTCACTTTCAACTGGGAATGTGTGGTCAGTTTCTTGTGGAACACGGAGGCTGCCTGCCCTATCCAGACAATCACAGAAACAGACCAGGCTTGCTCAATAAGGGACCCCAGCAGTGGGTTTGTGTTTAATCTTAGCCCACTCAACGATTCTGCTCAAGGACATGTGGTCTTAGGCATCGGAAAGACTTTTGTGTTCAATATCTGTGGTGCAATGCCTGCCTGTGGAACGGTTGCGGGGAAGCCAGCCTATGGCTGCGAGGCCGAAACTCAGATAGAAGATATTAAGGACCTAAGGCCACAAAGGCCGGTCGGGATGGAGAGGAGCCTCCAGTTGTCTGCCGAGGGATTCCTCACTCTGACCTACAAGGGCTCTTCTCCCTCTGACAGAGGTACTCAGATGGAGACCTCACCCTCATCTATTCTGGAGGTGATGAGTGTAGCTCTGGCTTCCAGAGGATGA
Peptide sequence:
MSVINFECNKTAGKDGRGEPVFTGEVDCTYFFTWDTKYACIKEKEDLLCGAINGKKRYDLSVLARHSESEQNWEAVDGSQAESEKYFFINVCHRVLQEGKARNCPEDAAVCAVDKNGSKNLGKFVSSPTKEKGHIQLSYTDGDDCGSDKKISTNITLVCKPGDLESAPVLRAARSDGCFYEFEWHTAAACVLSKTEGENCTVLDAQAGFSFDLSLLTKKNGAYKVETEKYDFYINVCGPVSMDPCQSNSGACQVAKSGKSWNLGLSSTKLTYYDGMIQLSYRNGTPYNNEKHTPRATLITFLCDRDAGVGFPEYQEEDNSTYNFRWYTSYACPEEPLECMVTDPSMMEQYDLSSLVKSEGGSGGNWYAMENSREHVTRRKYYLNVCRPLNPVPGCDRYASACQMKYENHEGSLAETVSISNLGVAKIGPVVEESGSLLLEYVNGSACTTSDGQLTTYSTRIHLVCGRGFMNSHPIFTFNWECVVSFLWNTEAACPIQTITETDQACSIRDPSSGFVFNLSPLNDSAQGHVVLGIGKTFVFNICGAMPACGTVAGKPAYGCEAETQIEDIKDLRPQRPVGMERSLQLSAEGFLTLTYKGSSPSDRGTQMETSPSSILEVMSVALASRG
IRESfinder result
IRESfinder score
0.441674841
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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