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mmu_circIft57_69
Basic information of circular RNA
PanCircBase ID:
mmu_circIft57_69
mm39_Chr. Position ID:
chr16|49532201|49532270|+
Gene name:
Ift57
Transcript:
ENSMUST00000046777.11
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
5
Exon/intron offsets:
0
Genomic length:
69
Exon/intron sizes in nt:
69
Flanking exon/introns:
chr16:49526544-49532201|chr16:49532270-49557034
Splice length:
69
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GAAGAGGAGACAGATAATGAAGAAAACTTTATTGATCTCAACGTTTTAAAGGCCCAGACCTATCGCTTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCAACGTTTTAAAGGCCCAGAC
59.38
AGTTTTCTTCATTATCTGTCTCCTCT
57.86
60
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CAACGTTTTAAAGGCCCAGACC
60.29
AAGTTTTCTTCATTATCTGTCTCCTCT
58.4
60
PCR template sequence:
TCTCAACGTTTTAAAGGCCCAGACCTATCGCTTGGAAGAGGAGACAGATAATGAAGAAAACTTTATTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-335-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GACCTATCGCTTGGAAGAGGAGACAG
siRNA sets
CTGTCTCCTCTTCCAAGCG, TGTCTCCTCTTCCAAGCGA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.721217119
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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