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mmu_circIde_501
Basic information of circular RNA
PanCircBase ID:
mmu_circIde_501
mm39_Chr. Position ID:
chr19|37295375|37306587|-
Gene name:
Ide
Transcript:
ENSMUST00000131070.3
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
5,4,3
Exon/intron offsets:
0,7171,11004
Genomic length:
11212
Exon/intron sizes in nt:
12,31,70,208
Flanking exon/introns:
chr19:37292916-37295375|chr19:37306587-37307826
Splice length:
501
Other database IDs:
circAtlas: hsa-SCAF8_0001
Human Ortholog IDs:
Mature spliced Sequence:
GTTCACTGTCAGACCCTCCAAATATTCCTGGCTTAAGTCATTTTTGTGAACATATGCTGTTTTTGGGAACCAAGAAATATCCTAAAGAAAATGAATATAGCCAGTTTCTCAGTGAACATGCTGGAAGTTCAAATGCATTCACCAGTGGAGAACACACCAATTATTATTTCGATGTTTCCCATGAACACTTGGAAGGAGCCCTGGACAGGTTTGCGCAGTTTTTCCTGTGCCCCTTGTTTGATGCAAGTTGTAAAGACAGAGAGGTGAACGCTGTCGATTCAGAACATGAGAAGAATGTGATGAACGATGCCTGGAGACTCTTCCAGCTGGAAAAGGCTACGGGGAACCCCAAACACCCCTTCAGCAAATTTGGGACAGGAAACAAATATACTCTAGAGACTCGGCCCAACCAAGAAGGCATCGACGTAAGGGAAGAGCTCTTGAAATTTCACTCTACGTATTATTCGTCCAATCTGATGGCGATTTGTGTTTTAGGTCGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AACCAAGAAGGCATCGACGT
59.97
TCTTGGTTCCCAAAAACAGCA
58.54
169
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCCAACCAAGAAGGCATCGA
60.32
TCTTGGTTCCCAAAAACAGCA
58.54
172
PCR template sequence:
CGGCCCAACCAAGAAGGCATCGACGTAAGGGAAGAGCTCTTGAAATTTCACTCTACGTATTATTCGTCCAATCTGATGGCGATTTGTGTTTTAGGTCGAGGTTCACTGTCAGACCCTCCAAATATTCCTGGCTTAAGTCATTTTTGTGAACATATGCTGTTTTTGGGAACCAAGAAATATCCTAAAGAAAATGAATATAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
2
Interacting miRNAs (#binding sites)
mmu-miR-369-3p(1), mmu-miR-532-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GTTTTAGGTCGAGGTTCACTGTCAGA
siRNA sets
TCTGACAGTGAACCTCGAC, CTGACAGTGAACCTCGACC, TGACAGTGAACCTCGACCT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCIDE_501_ORF_1
0.8843
0.133339711
0.977338958
948
ORF sequence:
ATGCTGTTTTTGGGAACCAAGAAATATCCTAAAGAAAATGAATATAGCCAGTTTCTCAGTGAACATGCTGGAAGTTCAAATGCATTCACCAGTGGAGAACACACCAATTATTATTTCGATGTTTCCCATGAACACTTGGAAGGAGCCCTGGACAGGTTTGCGCAGTTTTTCCTGTGCCCCTTGTTTGATGCAAGTTGTAAAGACAGAGAGGTGAACGCTGTCGATTCAGAACATGAGAAGAATGTGATGAACGATGCCTGGAGACTCTTCCAGCTGGAAAAGGCTACGGGGAACCCCAAACACCCCTTCAGCAAATTTGGGACAGGAAACAAATATACTCTAGAGACTCGGCCCAACCAAGAAGGCATCGACGTAAGGGAAGAGCTCTTGAAATTTCACTCTACGTATTATTCGTCCAATCTGATGGCGATTTGTGTTTTAGGTCGAGGTTCACTGTCAGACCCTCCAAATATTCCTGGCTTAAGTCATTTTTGTGAACATATGCTGTTTTTGGGAACCAAGAAATATCCTAAAGAAAATGAATATAGCCAGTTTCTCAGTGAACATGCTGGAAGTTCAAATGCATTCACCAGTGGAGAACACACCAATTATTATTTCGATGTTTCCCATGAACACTTGGAAGGAGCCCTGGACAGGTTTGCGCAGTTTTTCCTGTGCCCCTTGTTTGATGCAAGTTGTAAAGACAGAGAGGTGAACGCTGTCGATTCAGAACATGAGAAGAATGTGATGAACGATGCCTGGAGACTCTTCCAGCTGGAAAAGGCTACGGGGAACCCCAAACACCCCTTCAGCAAATTTGGGACAGGAAACAAATATACTCTAGAGACTCGGCCCAACCAAGAAGGCATCGACGTAAGGGAAGAGCTCTTGAAATTTCACTCTACGTATTATTCGTCCAATCTGATGGCGATTTGTGTTTTAGGTCGA
Peptide sequence:
MLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLCPLFDASCKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVREELLKFHSTYYSSNLMAICVLGRGSLSDPPNIPGLSHFCEHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLCPLFDASCKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVREELLKFHSTYYSSNLMAICVLGR
IRESfinder result
IRESfinder score
0.568238269
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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