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mmu_circIde_1055
Basic information of circular RNA
PanCircBase ID:
mmu_circIde_1055
mm39_Chr. Position ID:
chr19|37291378|37308011|-
Gene name:
Ide
Transcript:
ENSMUST00000131070.3
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
8,7,6,5,4,3,2
Exon/intron offsets:
0,854,1425,3997,11168,15001,16448
Genomic length:
16633
Exon/intron sizes in nt:
9,31,63,11,31,23,17,02,00,000
Flanking exon/introns:
chr19:37291000-37291378|chr19:37308011-37339912
Splice length:
1055
Other database IDs:
circAtlas: hsa-IDE_0054, CIRCpedia: HSA_CIRCpedia_348112
Human Ortholog IDs:
Mature spliced Sequence:
ATTCCCAAAACAGACTTACAGCACAATGAGTAATCCGGCCATCCAGAGAATAGAAGACCAAATTGTCAAGTCTCCTGAAGACAAACGGGAATACCGTGGACTAGAGCTGGCCAATGGCATCAAAGTGCTTCTCATCAGCGATCCCACCACAGACAAGTCCTCAGCGGCCCTCGATGTGCACATAGGTTCACTGTCAGACCCTCCAAATATTCCTGGCTTAAGTCATTTTTGTGAACATATGCTGTTTTTGGGAACCAAGAAATATCCTAAAGAAAATGAATATAGCCAGTTTCTCAGTGAACATGCTGGAAGTTCAAATGCATTCACCAGTGGAGAACACACCAATTATTATTTCGATGTTTCCCATGAACACTTGGAAGGAGCCCTGGACAGGTTTGCGCAGTTTTTCCTGTGCCCCTTGTTTGATGCAAGTTGTAAAGACAGAGAGGTGAACGCTGTCGATTCAGAACATGAGAAGAATGTGATGAACGATGCCTGGAGACTCTTCCAGCTGGAAAAGGCTACGGGGAACCCCAAACACCCCTTCAGCAAATTTGGGACAGGAAACAAATATACTCTAGAGACTCGGCCCAACCAAGAAGGCATCGACGTAAGGGAAGAGCTCTTGAAATTTCACTCTACGTATTATTCGTCCAATCTGATGGCGATTTGTGTTTTAGGTCGAGAATCCTTAGACGACCTCACTAACCTGGTGGTGAAGCTGTTCTCCGAGGTGGAGAACAAGAACGTTCCTCTGCCTGAGTTCCCTGAGCACCCTTTCCAGGAAGAGCATCTCAGGCAACTTTATAAAATAGTACCCATTAAGGATATTAGAAATCTTTATGTGACATTTCCCATACCAGACCTTCAGCAGTACTACAAATCCAATCCTGGTCATTATCTTGGTCATCTAATTGGGCACGAAGGTCCTGGAAGCCTGTTGTCAGAACTCAAATCAAAGGGCTGGGTGAATACCCTGGTTGGTGGACAGAAGGAAGGAGCCCGAGGTTTTATGTTTTTTATCATTAATGTGGACTTAACTGAAGAAGGGTTAT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCAAAGGGCTGGGTGAATACC
59.99
GGCCGGATTACTCATTGTGC
59.34
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GTGGACAGAAGGAAGGAGCC
60.04
TCCCGTTTGTCTTCAGGAGA
58.29
162
PCR template sequence:
TCAAAGGGCTGGGTGAATACCCTGGTTGGTGGACAGAAGGAAGGAGCCCGAGGTTTTATGTTTTTTATCATTAATGTGGACTTAACTGAAGAAGGGTTATATTCCCAAAACAGACTTACAGCACAATGAGTAATCCGGCCATCCAGAGAATAGAAGACCAAATTGTCAAGTCTCCTGAAGACAAACGGGAATACCGTGGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-298-5p(1), mmu-miR-541-5p(1), mmu-miR-369-3p(1), mmu-miR-532-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GAAGAAGGGTTATATTCCCAAAACAG
siRNA sets
CTGTTTTGGGAATATAACC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCIDE_1055_ORF_1
0.8729
0.155078967
0.990116844
1059
ORF sequence:
ATGAGTAATCCGGCCATCCAGAGAATAGAAGACCAAATTGTCAAGTCTCCTGAAGACAAACGGGAATACCGTGGACTAGAGCTGGCCAATGGCATCAAAGTGCTTCTCATCAGCGATCCCACCACAGACAAGTCCTCAGCGGCCCTCGATGTGCACATAGGTTCACTGTCAGACCCTCCAAATATTCCTGGCTTAAGTCATTTTTGTGAACATATGCTGTTTTTGGGAACCAAGAAATATCCTAAAGAAAATGAATATAGCCAGTTTCTCAGTGAACATGCTGGAAGTTCAAATGCATTCACCAGTGGAGAACACACCAATTATTATTTCGATGTTTCCCATGAACACTTGGAAGGAGCCCTGGACAGGTTTGCGCAGTTTTTCCTGTGCCCCTTGTTTGATGCAAGTTGTAAAGACAGAGAGGTGAACGCTGTCGATTCAGAACATGAGAAGAATGTGATGAACGATGCCTGGAGACTCTTCCAGCTGGAAAAGGCTACGGGGAACCCCAAACACCCCTTCAGCAAATTTGGGACAGGAAACAAATATACTCTAGAGACTCGGCCCAACCAAGAAGGCATCGACGTAAGGGAAGAGCTCTTGAAATTTCACTCTACGTATTATTCGTCCAATCTGATGGCGATTTGTGTTTTAGGTCGAGAATCCTTAGACGACCTCACTAACCTGGTGGTGAAGCTGTTCTCCGAGGTGGAGAACAAGAACGTTCCTCTGCCTGAGTTCCCTGAGCACCCTTTCCAGGAAGAGCATCTCAGGCAACTTTATAAAATAGTACCCATTAAGGATATTAGAAATCTTTATGTGACATTTCCCATACCAGACCTTCAGCAGTACTACAAATCCAATCCTGGTCATTATCTTGGTCATCTAATTGGGCACGAAGGTCCTGGAAGCCTGTTGTCAGAACTCAAATCAAAGGGCTGGGTGAATACCCTGGTTGGTGGACAGAAGGAAGGAGCCCGAGGTTTTATGTTTTTTATCATTAATGTGGACTTAACTGAAGAAGGGTTATATTCCCAAAACAGACTTACAGCACAATGA
Peptide sequence:
MSNPAIQRIEDQIVKSPEDKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIPGLSHFCEHMLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLCPLFDASCKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVREELLKFHSTYYSSNLMAICVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLRQLYKIVPIKDIRNLYVTFPIPDLQQYYKSNPGHYLGHLIGHEGPGSLLSELKSKGWVNTLVGGQKEGARGFMFFIINVDLTEEGLYSQNRLTAQ
IRESfinder result
IRESfinder score
0.611673434
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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