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mmu_circIars_1626
Basic information of circular RNA
PanCircBase ID:
mmu_circIars_1626
mm39_Chr. Position ID:
chr13|49857746|49876552|+
Gene name:
Iars
Transcript:
ENSMUST00000165316.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
15
Exon/intron indexes:
11,12,13,14,15,16,17,18,19,20,21,22,23,24,25
Exon/intron offsets:
0,562,1516,2408,4135,5308,7479,10543,11414,13635,15307,16810,17875,18399,18722
Genomic length:
18806
Exon/intron sizes in nt:
123,92,99,127,74,195,87,84,145,121,92,78,122,103,84
Flanking exon/introns:
chr13:49856738-49857746|chr13:49876552-49878093
Splice length:
1626
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GATGATCATCGTGTCTGTATGGACTTCAACATTATTCAGAAAGACTCAGTCCCTGTTTGTCCTGTGGATGCTTCAGGCTGCTTCACAGAGGAAGTGACACATTTTGTGGGGCAGTATGTGAAGGATGCTGACAAAAATATCATTAGGATGTTGAAGGAGCAGGGCCGGCTGCTGGCGGCGGGCACGTTCACTCACAGCTACCCTTTCTGCTGGAGGTCAGACACGCCCCTCATTTACAAGTCTGTGCCCAGCTGGTTTGTGCGGGTGGAGCCCATGGTGGACCAGCTACTGAAGAACAACGACCTGTGCTACTGGGTCCCAGAGTTTGTACGAGAAAAACGGTTTGGAAATTGGCTGAAGGAGGCCCGTGACTGGGCAATTTCCAGAAACAGATACTGGGGCACCCCCATCCCACTGTGGGTCAGCGAAGACTTGGAGGAGGTAGTGTGCATTGGATCAGTGGCAGAGCTTGAAGAACTGTCGGGAACAAAAATCTCAGATCTCCACAGAGAGAGCATCGACCACCTGACCATCCCATCCCGCTGCGGGAAAGCACCATTGCGGCGCGTCTCTGAGGTGTTTGACTGCTGGTTCGAGAGTGGAAGTATGCCCTATGCCCAGGTCCATTATCCGTTCGAGAGCAAGCGCGAGTTTGAGGATGCCTTTCCTGCAGACTTCATTGCTGAAGGCATCGATCAAACCAGAGGATGGTTTTACACCCTGCTGGTGCTAGCCACAGCGCTCTTTGGACAGCCACCTTTCAAGAATGTGATTGTGAATGGCCTCATCTTGGCAAGTGATGGCCAAAAAATGAGCAAGCGGAAAAAGAACTACCCAGATCCAGTTTCCATCATCGATAAGTATGGTGCGGACGCCCTCAGGTTATATCTGATCAATTCCCCTGTGGTAAGAGCAGAAAACCTGCGCTTCAAGGAGGAAGGTGTGCGGGATGTCCTCAAAGATGTGCTGCTCCCGTGGTACAACGCTTACCGCTTCTTCATCCAGAACGTCTTTAGGCTCCACAAGGAAGAAGAAGTGAAGTTCCTATACAACGAGCATACAGTCAGAGAAAGCCCTAACATCACCGACCGCTGGGTTCTGTCCTTCATGCAGTCGCTCCTTGGCTTCTTTGAGACCGAAATGGCAGCTTACAGGCTGTACACTGTGGTACCTCGCCTGGTCAAGTTTGTAGATATTCTAACCAACTGGTATGTCCGAATGAACAGGAGGAGGTTAAAGGGTGAGAGTGGGGTGGAAGACTGTGTCATGGCTCTGGAGACACTGTTCAGTGTCCTGCTTTCTCTGTGCAGACTGATGGCCCCTTACACGCCCTTTCTGACTGAGCTGATGTACCAGAATCTAAAGCTGCTGATTGATCCTGCTTCTCTCCGGGACAAGGACACACTCAGCATCCACTACCTCATGCTGCCTCGAGTTCGAGAGGAGCTGATTGACAAGAAAACTGAGAACGCCGTGTCTAGGATGCAGTCTGTGATCGAGCTTGGAAGAGTGATACGAGACCGAAAAACTATTCCAATAAAGTATCCTCTGAAGGAAATTGTGGTCATCCACCAAGACCCAGAAGCTCTAGAGGATATCAGGTCCTTGGAGAAGTATATCATTGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGTCATCCACCAAGACCCAG
60.04
CCTCTGTGAAGCAGCCTGAA
59.96
155
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGTCATCCACCAAGACCCAG
60.04
TTCCTCTGTGAAGCAGCCTG
59.96
157
PCR template sequence:
AACTATTCCAATAAAGTATCCTCTGAAGGAAATTGTGGTCATCCACCAAGACCCAGAAGCTCTAGAGGATATCAGGTCCTTGGAGAAGTATATCATTGAGGATGATCATCGTGTCTGTATGGACTTCAACATTATTCAGAAAGACTCAGTCCCTGTTTGTCCTGTGGATGCTTCAGGCTGCTTCACAGAGGAAGTGACAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
25
Interacting miRNAs (#binding sites)
mmu-miR-217-5p(2), mmu-let-7a-5p(1), mmu-miR-16-5p(1), mmu-miR-15a-5p(1), mmu-let-7e-5p(1), mmu-let-7b-5p(1), mmu-let-7c-5p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-196a-5p(1), mmu-miR-185-5p(1), mmu-miR-128-3p(1), mmu-let-7d-5p(1), mmu-miR-29b-1-5p(1), mmu-miR-382-3p(1), mmu-miR-22-3p(1), mmu-miR-425-5p(1), mmu-miR-383-5p(1), mmu-miR-342-5p(1), mmu-miR-98-5p(1), mmu-miR-410-3p(1), mmu-miR-532-5p(1), mmu-miR-697(1), mmu-miR-1904(1), mmu-miR-574-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GTATATCATTGAGGATGATCATCGTG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCIARS_1626_ORF_1
1.1923
0.365812076
1
3234
ORF sequence:
ATGGACTTCAACATTATTCAGAAAGACTCAGTCCCTGTTTGTCCTGTGGATGCTTCAGGCTGCTTCACAGAGGAAGTGACACATTTTGTGGGGCAGTATGTGAAGGATGCTGACAAAAATATCATTAGGATGTTGAAGGAGCAGGGCCGGCTGCTGGCGGCGGGCACGTTCACTCACAGCTACCCTTTCTGCTGGAGGTCAGACACGCCCCTCATTTACAAGTCTGTGCCCAGCTGGTTTGTGCGGGTGGAGCCCATGGTGGACCAGCTACTGAAGAACAACGACCTGTGCTACTGGGTCCCAGAGTTTGTACGAGAAAAACGGTTTGGAAATTGGCTGAAGGAGGCCCGTGACTGGGCAATTTCCAGAAACAGATACTGGGGCACCCCCATCCCACTGTGGGTCAGCGAAGACTTGGAGGAGGTAGTGTGCATTGGATCAGTGGCAGAGCTTGAAGAACTGTCGGGAACAAAAATCTCAGATCTCCACAGAGAGAGCATCGACCACCTGACCATCCCATCCCGCTGCGGGAAAGCACCATTGCGGCGCGTCTCTGAGGTGTTTGACTGCTGGTTCGAGAGTGGAAGTATGCCCTATGCCCAGGTCCATTATCCGTTCGAGAGCAAGCGCGAGTTTGAGGATGCCTTTCCTGCAGACTTCATTGCTGAAGGCATCGATCAAACCAGAGGATGGTTTTACACCCTGCTGGTGCTAGCCACAGCGCTCTTTGGACAGCCACCTTTCAAGAATGTGATTGTGAATGGCCTCATCTTGGCAAGTGATGGCCAAAAAATGAGCAAGCGGAAAAAGAACTACCCAGATCCAGTTTCCATCATCGATAAGTATGGTGCGGACGCCCTCAGGTTATATCTGATCAATTCCCCTGTGGTAAGAGCAGAAAACCTGCGCTTCAAGGAGGAAGGTGTGCGGGATGTCCTCAAAGATGTGCTGCTCCCGTGGTACAACGCTTACCGCTTCTTCATCCAGAACGTCTTTAGGCTCCACAAGGAAGAAGAAGTGAAGTTCCTATACAACGAGCATACAGTCAGAGAAAGCCCTAACATCACCGACCGCTGGGTTCTGTCCTTCATGCAGTCGCTCCTTGGCTTCTTTGAGACCGAAATGGCAGCTTACAGGCTGTACACTGTGGTACCTCGCCTGGTCAAGTTTGTAGATATTCTAACCAACTGGTATGTCCGAATGAACAGGAGGAGGTTAAAGGGTGAGAGTGGGGTGGAAGACTGTGTCATGGCTCTGGAGACACTGTTCAGTGTCCTGCTTTCTCTGTGCAGACTGATGGCCCCTTACACGCCCTTTCTGACTGAGCTGATGTACCAGAATCTAAAGCTGCTGATTGATCCTGCTTCTCTCCGGGACAAGGACACACTCAGCATCCACTACCTCATGCTGCCTCGAGTTCGAGAGGAGCTGATTGACAAGAAAACTGAGAACGCCGTGTCTAGGATGCAGTCTGTGATCGAGCTTGGAAGAGTGATACGAGACCGAAAAACTATTCCAATAAAGTATCCTCTGAAGGAAATTGTGGTCATCCACCAAGACCCAGAAGCTCTAGAGGATATCAGGTCCTTGGAGAAGTATATCATTGAGGATGATCATCGTGTCTGTATGGACTTCAACATTATTCAGAAAGACTCAGTCCCTGTTTGTCCTGTGGATGCTTCAGGCTGCTTCACAGAGGAAGTGACACATTTTGTGGGGCAGTATGTGAAGGATGCTGACAAAAATATCATTAGGATGTTGAAGGAGCAGGGCCGGCTGCTGGCGGCGGGCACGTTCACTCACAGCTACCCTTTCTGCTGGAGGTCAGACACGCCCCTCATTTACAAGTCTGTGCCCAGCTGGTTTGTGCGGGTGGAGCCCATGGTGGACCAGCTACTGAAGAACAACGACCTGTGCTACTGGGTCCCAGAGTTTGTACGAGAAAAACGGTTTGGAAATTGGCTGAAGGAGGCCCGTGACTGGGCAATTTCCAGAAACAGATACTGGGGCACCCCCATCCCACTGTGGGTCAGCGAAGACTTGGAGGAGGTAGTGTGCATTGGATCAGTGGCAGAGCTTGAAGAACTGTCGGGAACAAAAATCTCAGATCTCCACAGAGAGAGCATCGACCACCTGACCATCCCATCCCGCTGCGGGAAAGCACCATTGCGGCGCGTCTCTGAGGTGTTTGACTGCTGGTTCGAGAGTGGAAGTATGCCCTATGCCCAGGTCCATTATCCGTTCGAGAGCAAGCGCGAGTTTGAGGATGCCTTTCCTGCAGACTTCATTGCTGAAGGCATCGATCAAACCAGAGGATGGTTTTACACCCTGCTGGTGCTAGCCACAGCGCTCTTTGGACAGCCACCTTTCAAGAATGTGATTGTGAATGGCCTCATCTTGGCAAGTGATGGCCAAAAAATGAGCAAGCGGAAAAAGAACTACCCAGATCCAGTTTCCATCATCGATAAGTATGGTGCGGACGCCCTCAGGTTATATCTGATCAATTCCCCTGTGGTAAGAGCAGAAAACCTGCGCTTCAAGGAGGAAGGTGTGCGGGATGTCCTCAAAGATGTGCTGCTCCCGTGGTACAACGCTTACCGCTTCTTCATCCAGAACGTCTTTAGGCTCCACAAGGAAGAAGAAGTGAAGTTCCTATACAACGAGCATACAGTCAGAGAAAGCCCTAACATCACCGACCGCTGGGTTCTGTCCTTCATGCAGTCGCTCCTTGGCTTCTTTGAGACCGAAATGGCAGCTTACAGGCTGTACACTGTGGTACCTCGCCTGGTCAAGTTTGTAGATATTCTAACCAACTGGTATGTCCGAATGAACAGGAGGAGGTTAAAGGGTGAGAGTGGGGTGGAAGACTGTGTCATGGCTCTGGAGACACTGTTCAGTGTCCTGCTTTCTCTGTGCAGACTGATGGCCCCTTACACGCCCTTTCTGACTGAGCTGATGTACCAGAATCTAAAGCTGCTGATTGATCCTGCTTCTCTCCGGGACAAGGACACACTCAGCATCCACTACCTCATGCTGCCTCGAGTTCGAGAGGAGCTGATTGACAAGAAAACTGAGAACGCCGTGTCTAGGATGCAGTCTGTGATCGAGCTTGGAAGAGTGATACGAGACCGAAAAACTATTCCAATAAAGTATCCTCTGAAGGAAATTGTGGTCATCCACCAAGACCCAGAAGCTCTAGAGGATATCAGGTCCTTGGAGAAGTATATCATTGAG
Peptide sequence:
MDFNIIQKDSVPVCPVDASGCFTEEVTHFVGQYVKDADKNIIRMLKEQGRLLAAGTFTHSYPFCWRSDTPLIYKSVPSWFVRVEPMVDQLLKNNDLCYWVPEFVREKRFGNWLKEARDWAISRNRYWGTPIPLWVSEDLEEVVCIGSVAELEELSGTKISDLHRESIDHLTIPSRCGKAPLRRVSEVFDCWFESGSMPYAQVHYPFESKREFEDAFPADFIAEGIDQTRGWFYTLLVLATALFGQPPFKNVIVNGLILASDGQKMSKRKKNYPDPVSIIDKYGADALRLYLINSPVVRAENLRFKEEGVRDVLKDVLLPWYNAYRFFIQNVFRLHKEEEVKFLYNEHTVRESPNITDRWVLSFMQSLLGFFETEMAAYRLYTVVPRLVKFVDILTNWYVRMNRRRLKGESGVEDCVMALETLFSVLLSLCRLMAPYTPFLTELMYQNLKLLIDPASLRDKDTLSIHYLMLPRVREELIDKKTENAVSRMQSVIELGRVIRDRKTIPIKYPLKEIVVIHQDPEALEDIRSLEKYIIEDDHRVCMDFNIIQKDSVPVCPVDASGCFTEEVTHFVGQYVKDADKNIIRMLKEQGRLLAAGTFTHSYPFCWRSDTPLIYKSVPSWFVRVEPMVDQLLKNNDLCYWVPEFVREKRFGNWLKEARDWAISRNRYWGTPIPLWVSEDLEEVVCIGSVAELEELSGTKISDLHRESIDHLTIPSRCGKAPLRRVSEVFDCWFESGSMPYAQVHYPFESKREFEDAFPADFIAEGIDQTRGWFYTLLVLATALFGQPPFKNVIVNGLILASDGQKMSKRKKNYPDPVSIIDKYGADALRLYLINSPVVRAENLRFKEEGVRDVLKDVLLPWYNAYRFFIQNVFRLHKEEEVKFLYNEHTVRESPNITDRWVLSFMQSLLGFFETEMAAYRLYTVVPRLVKFVDILTNWYVRMNRRRLKGESGVEDCVMALETLFSVLLSLCRLMAPYTPFLTELMYQNLKLLIDPASLRDKDTLSIHYLMLPRVREELIDKKTENAVSRMQSVIELGRVIRDRKTIPIKYPLKEIVVIHQDPEALEDIRSLEKYIIE
IRESfinder result
IRESfinder score
0.470388834
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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