top of page
mmu_circHsp90ab1_810
Basic information of circular RNA
PanCircBase ID:
mmu_circHsp90ab1_810
mm39_Chr. Position ID:
chr17|45881183|45882545|-
Gene name:
Hsp90ab1
Transcript:
ENSMUST00000024739.14
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
6,5,4,3
Exon/intron offsets:
0,408,760,1155
Genomic length:
1362
Exon/intron sizes in nt:
3,09,13,41,60,207
Flanking exon/introns:
chr17:45880752-45881183|chr17:45882545-45882690
Splice length:
810
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GCCCTGGACAAGATTCGATATGAGAGCCTGACGGACCCTTCTAAGTTGGACAGTGGGAAAGAGCTGAAAATTGACATCATCCCCAACCCTCAGGAGCGCACGCTGACTTTGGTGGACACAGGCATTGGCATGACCAAGGCTGACCTCATTAATAACCTGGGAACCATTGCTAAGTCTGGCACGAAGGCGTTCATGGAGGCTCTCCAGGCTGGTGCAGACATCTCCATGATCGGGCAGTTTGGTGTCGGATTCTACTCGGCCTATCTAGTTGCAGAGAAAGTGGTTGTGATCACGAAGCACAATGATGATGAGCAGTATGCCTGGGAGTCGTCTGCGGGTGGCTCCTTCACCGTCCGGGCAGACCATGGTGAGCCCATTGGCCGGGGTACCAAAGTGATCCTTCACCTCAAAGAAGACCAGACAGAGTACTTGGAGGAGAGGAGGGTCAAGGAAGTGGTGAAGAAACATTCGCAGTTCATAGGCTATCCCATCACCCTCTATTTGGAGAAGGAACGGGAGAAGGAGATCAGTGATGATGAGGCAGAGGAAGAGAAAGGTGAGAAAGAGGAGGAAGATAAGGAGGATGAGGAGAAGCCTAAGATTGAAGATGTGGGATCCGATGAGGAAGATGACAGCGGCAAAGACAAGAAAAAGAAAACAAAGAAGATCAAAGAGAAGTACATTGACCAGGAGGAGCTGAACAAGACAAAGCCTATCTGGACCAGAAACCCGGATGACATCACGCAGGAGGAGTATGGCGAATTCTATAAGAGCCTCACCAATGACTGGGAGGACCACTTGGCAGTCAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCAGGAGGAGTATGGCGAAT
59.61
TCCTGAGGGTTGGGGATGAT
59.95
162
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GATGACATCACGCAGGAGGA
59.54
TCCTGAGGGTTGGGGATGAT
59.95
173
PCR template sequence:
GCCTATCTGGACCAGAAACCCGGATGACATCACGCAGGAGGAGTATGGCGAATTCTATAAGAGCCTCACCAATGACTGGGAGGACCACTTGGCAGTCAAGGCCCTGGACAAGATTCGATATGAGAGCCTGACGGACCCTTCTAAGTTGGACAGTGGGAAAGAGCTGAAAATTGACATCATCCCCAACCCTCAGGAGCGCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-207(2), mmu-miR-9-5p(1), mmu-miR-127-3p(1), mmu-miR-433-5p(1), mmu-miR-218-5p(1), mmu-miR-296-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CTTGGCAGTCAAGGCCCTGGACAAGA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCHSP90AB1_810_ORF_1
1.2415
0.598541998
0.999964091
1491
ORF sequence:
ATGACCAAGGCTGACCTCATTAATAACCTGGGAACCATTGCTAAGTCTGGCACGAAGGCGTTCATGGAGGCTCTCCAGGCTGGTGCAGACATCTCCATGATCGGGCAGTTTGGTGTCGGATTCTACTCGGCCTATCTAGTTGCAGAGAAAGTGGTTGTGATCACGAAGCACAATGATGATGAGCAGTATGCCTGGGAGTCGTCTGCGGGTGGCTCCTTCACCGTCCGGGCAGACCATGGTGAGCCCATTGGCCGGGGTACCAAAGTGATCCTTCACCTCAAAGAAGACCAGACAGAGTACTTGGAGGAGAGGAGGGTCAAGGAAGTGGTGAAGAAACATTCGCAGTTCATAGGCTATCCCATCACCCTCTATTTGGAGAAGGAACGGGAGAAGGAGATCAGTGATGATGAGGCAGAGGAAGAGAAAGGTGAGAAAGAGGAGGAAGATAAGGAGGATGAGGAGAAGCCTAAGATTGAAGATGTGGGATCCGATGAGGAAGATGACAGCGGCAAAGACAAGAAAAAGAAAACAAAGAAGATCAAAGAGAAGTACATTGACCAGGAGGAGCTGAACAAGACAAAGCCTATCTGGACCAGAAACCCGGATGACATCACGCAGGAGGAGTATGGCGAATTCTATAAGAGCCTCACCAATGACTGGGAGGACCACTTGGCAGTCAAGGCCCTGGACAAGATTCGATATGAGAGCCTGACGGACCCTTCTAAGTTGGACAGTGGGAAAGAGCTGAAAATTGACATCATCCCCAACCCTCAGGAGCGCACGCTGACTTTGGTGGACACAGGCATTGGCATGACCAAGGCTGACCTCATTAATAACCTGGGAACCATTGCTAAGTCTGGCACGAAGGCGTTCATGGAGGCTCTCCAGGCTGGTGCAGACATCTCCATGATCGGGCAGTTTGGTGTCGGATTCTACTCGGCCTATCTAGTTGCAGAGAAAGTGGTTGTGATCACGAAGCACAATGATGATGAGCAGTATGCCTGGGAGTCGTCTGCGGGTGGCTCCTTCACCGTCCGGGCAGACCATGGTGAGCCCATTGGCCGGGGTACCAAAGTGATCCTTCACCTCAAAGAAGACCAGACAGAGTACTTGGAGGAGAGGAGGGTCAAGGAAGTGGTGAAGAAACATTCGCAGTTCATAGGCTATCCCATCACCCTCTATTTGGAGAAGGAACGGGAGAAGGAGATCAGTGATGATGAGGCAGAGGAAGAGAAAGGTGAGAAAGAGGAGGAAGATAAGGAGGATGAGGAGAAGCCTAAGATTGAAGATGTGGGATCCGATGAGGAAGATGACAGCGGCAAAGACAAGAAAAAGAAAACAAAGAAGATCAAAGAGAAGTACATTGACCAGGAGGAGCTGAACAAGACAAAGCCTATCTGGACCAGAAACCCGGATGACATCACGCAGGAGGAGTATGGCGAATTCTATAAGAGCCTCACCAATGACTGGGAGGACCACTTGGCAGTCAAG
Peptide sequence:
MTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKEREKEISDDEAEEEKGEKEEEDKEDEEKPKIEDVGSDEEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVKALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEALQAGADISMIGQFGVGFYSAYLVAEKVVVITKHNDDEQYAWESSAGGSFTVRADHGEPIGRGTKVILHLKEDQTEYLEERRVKEVVKKHSQFIGYPITLYLEKEREKEISDDEAEEEKGEKEEEDKEDEEKPKIEDVGSDEEDDSGKDKKKKTKKIKEKYIDQEELNKTKPIWTRNPDDITQEEYGEFYKSLTNDWEDHLAVK
IRESfinder result
IRESfinder score
0.290501535
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page