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mmu_circHsd17b12_123
Basic information of circular RNA
PanCircBase ID:
mmu_circHsd17b12_123
mm39_Chr. Position ID:
chr2|93945337|93947821|-
Gene name:
Hsd17b12
Transcript:
ENSMUST00000028619.5
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
3,2
Exon/intron offsets:
0,2437
Genomic length:
2484
Exon/intron sizes in nt:
76,47
Flanking exon/introns:
chr2:93913619-93945337|chr2:93947821-93988054
Splice length:
123
Other database IDs:
CIRCpedia: MMU_CIRCpedia_34716, circAtlas: mmu-Hsd17b12_0002
circBase: hsa_circ_0095839, circAtlas: hsa-RP11-472I20_0005, CIRCpedia: HSA_CIRCpedia_4391
Human Ortholog IDs:
Mature spliced Sequence:
TTGTTACAGGTGGCACTGATGGAATTGGAAAAGCATATGCAGAAGAGTTAGCAAAACGTGGAATGAAGATTGTCCTGATCAGCAGGTCCCAAGATAAACTGAATCAGGTTTCCAACAACATCA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGAAGATTGTCCTGATCAGCAG
58.13
CACGTTTTGCTAACTCTTCTGCA
60
120
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGAAGATTGTCCTGATCAGCA
57.01
CACGTTTTGCTAACTCTTCTGCA
60
120
PCR template sequence:
ATGAAGATTGTCCTGATCAGCAGGTCCCAAGATAAACTGAATCAGGTTTCCAACAACATCATTGTTACAGGTGGCACTGATGGAATTGGAAAAGCATATGCAGAAGAGTTAGCAAAACGTGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
TCCAACAACATCATTGTTACAGGTGG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCHSD17B12_123_ORF_1
1.0864
0.284752781
0.322187484
183
ORF sequence:
ATGAAGATTGTCCTGATCAGCAGGTCCCAAGATAAACTGAATCAGGTTTCCAACAACATCATTGTTACAGGTGGCACTGATGGAATTGGAAAAGCATATGCAGAAGAGTTAGCAAAACGTGGAATGAAGATTGTCCTGATCAGCAGGTCCCAAGATAAACTGAATCAGGTTTCCAACAACATC
Peptide sequence:
MKIVLISRSQDKLNQVSNNIIVTGGTDGIGKAYAEELAKRGMKIVLISRSQDKLNQVSNNI
IRESfinder result
IRESfinder score
0.561842768
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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