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mmu_circGtf2i_243
Basic information of circular RNA
PanCircBase ID:
mmu_circGtf2i_243
mm39_Chr. Position ID:
chr5|134283866|134284862|-
Gene name:
Gtf2i
Transcript:
ENSMUST00000059042.15
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
19,18
Exon/intron offsets:
0,812
Genomic length:
996
Exon/intron sizes in nt:
59,184
Flanking exon/introns:
chr5:134280791-134283866|chr5:134284862-134289420
Splice length:
243
Other database IDs:
CIRCpedia: HSA_CIRCpedia_113595
Human Ortholog IDs:
Mature spliced Sequence:
CCGAGGCCTTGGGAAGCACGGAAGCCAAGGCTGTACCGTACCAAAAATTTGAGGCCCATCCCAATGATCTCTATGTGGAAGGACTTCCAGAAAACATTCCTTTCCGAAGCCCCTCGTGGTATGGAATCCCAAGACTGGAAAAAATCATCCAAGTGGGCAATCGAATTAAATTTGTTATCAAGAGACCAGAGCTGCTCACTCACAGCACAACTGAAGTGACTCAGCCACGGACAAACACACCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCATCCAAGTGGGCAATCGA
59.38
GTACGGTACAGCCTTGGCTT
60.04
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCATCCAAGTGGGCAATCGA
59.38
TTGGTACGGTACAGCCTTGG
59.68
143
PCR template sequence:
ATCATCCAAGTGGGCAATCGAATTAAATTTGTTATCAAGAGACCAGAGCTGCTCACTCACAGCACAACTGAAGTGACTCAGCCACGGACAAACACACCAGCCGAGGCCTTGGGAAGCACGGAAGCCAAGGCTGTACCGTACCAAAAATTTGAGGCCCATCCCAATGATCTCTATGTGGAAGGACTTCCAGAAAACATTCC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
ACAAACACACCAGCCGAGGCCTTGGG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.618735259
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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