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mmu_circGspt1_264
Basic information of circular RNA
PanCircBase ID:
mmu_circGspt1_264
mm39_Chr. Position ID:
chr16|11041075|11042457|-
Gene name:
Gspt1
Transcript:
ENSMUST00000167571.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
13,12
Exon/intron offsets:
0,1208
Genomic length:
1382
Exon/intron sizes in nt:
90,174
Flanking exon/introns:
chr16:11040617-11041075|chr16:11042457-11045978
Splice length:
264
Other database IDs:
CIRCpedia: MMU_CIRCpedia_3328, circAtlas: mmu-Gspt1_0019
Human Ortholog IDs:
Mature spliced Sequence:
CACAACGTGGAAGTTCTTGGAATACTTTCTGATGATGTAGAAACGGACTCTGTAGCTCCAGGTGAAAACCTCAAAATCAGACTGAAAGGAATTGAAGAGGAAGAGATTCTTCCAGGATTCATCCTTTGTGATCTTAATAATCTTTGTCATTCTGGACGCACATTTGATGCTCAGATAGTGATTATAGAGCACAAGTCCATCATCTGCCCAGGGTATAATGCGGTGCTGCATATTCATACCTGTATCGAAGAAGTCGAAATAACA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCACAAGTCCATCATCTGCC
59.26
CACCTGGAGCTACAGAGTCC
59.18
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GAGCACAAGTCCATCATCTGC
59.33
CCTGGAGCTACAGAGTCCGT
60.68
140
PCR template sequence:
TGATGCTCAGATAGTGATTATAGAGCACAAGTCCATCATCTGCCCAGGGTATAATGCGGTGCTGCATATTCATACCTGTATCGAAGAAGTCGAAATAACACACAACGTGGAAGTTCTTGGAATACTTTCTGATGATGTAGAAACGGACTCTGTAGCTCCAGGTGAAAACCTCAAAATCAGACTGAAAGGAATTGAAGAGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
AGTCGAAATAACACACAACGTGGAAG
siRNA sets
CACGTTGTGTGTTATTTCG, ACGTTGTGTGTTATTTCGA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.674346688
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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