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mmu_circGpr107_501
Basic information of circular RNA
PanCircBase ID:
mmu_circGpr107_501
mm39_Chr. Position ID:
chr2|31074809|31099162|+
Gene name:
Gpr107
Transcript:
ENSMUST00000056433.7
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
6
Exon/intron indexes:
11,12,13,14,15,16
Exon/intron offsets:
0,691,3885,7049,22881,24269
Genomic length:
24353
Exon/intron sizes in nt:
74,118,131,44,50,84
Flanking exon/introns:
chr2:31073667-31074809|chr2:31099162-31100460
Splice length:
501
Other database IDs:
circAtlas: hsa-SCAF8_0001
Human Ortholog IDs:
Mature spliced Sequence:
ATCGACTACCACTACATCTCCTCGCAGGGCTTTCCGATTGAAGGCTGGGCTGTTGTATACTACATAACTCACCTGCTAAAGGGCGCACTCCTGTTCATCACCATCGCCCTCATCGGCACTGGCTGGGCCTTCATCAAGCACATCCTGTCTGATAAAGACAAGAAGATCTTCATGATTGTCATCCCGCTCCAGGTCCTGGCGAATGTGGCCTACATCATCATAGAGTCCACTGAGGAGGGCACAACTGAGTATGGCCTATGGAAGGACTCTCTGTTCCTGGTTGACTTGCTTTGCTGTGGCGCCATCCTCTTCCCAGTGGTGTGGTCAATCAGGCATTTACAAGAAGCCTCCGCCACAGATGGAAAAGCTGCCATTAACTTAGCGAAGCTGAGGCTTTTCAGACATTACTACGTCTTGATTGTGTGCTACATCTACTTTACCAGGATCATCGCCTTCCTTCTCAAGTTTGCTGTTCCATTCCAGTGGAAGTGGCTCTACCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCAGGATCATCGCCTTCCTT
59.53
GAACAGGAGTGCGCCCTTTA
60.32
158
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCAGGATCATCGCCTTCCTT
59.53
CGCCCTTTAGCAGGTGAGTT
60.32
147
PCR template sequence:
ACATTACTACGTCTTGATTGTGTGCTACATCTACTTTACCAGGATCATCGCCTTCCTTCTCAAGTTTGCTGTTCCATTCCAGTGGAAGTGGCTCTACCAGATCGACTACCACTACATCTCCTCGCAGGGCTTTCCGATTGAAGGCTGGGCTGTTGTATACTACATAACTCACCTGCTAAAGGGCGCACTCCTGTTCATCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-218-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GTGGCTCTACCAGATCGACTACCACT
siRNA sets
TAGTCGATCTGGTAGAGCC, GTAGTCGATCTGGTAGAGC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCGPR107_501_ORF_1
1.2555
0.323638657
0.987729946
831
ORF sequence:
ATGATTGTCATCCCGCTCCAGGTCCTGGCGAATGTGGCCTACATCATCATAGAGTCCACTGAGGAGGGCACAACTGAGTATGGCCTATGGAAGGACTCTCTGTTCCTGGTTGACTTGCTTTGCTGTGGCGCCATCCTCTTCCCAGTGGTGTGGTCAATCAGGCATTTACAAGAAGCCTCCGCCACAGATGGAAAAGCTGCCATTAACTTAGCGAAGCTGAGGCTTTTCAGACATTACTACGTCTTGATTGTGTGCTACATCTACTTTACCAGGATCATCGCCTTCCTTCTCAAGTTTGCTGTTCCATTCCAGTGGAAGTGGCTCTACCAGATCGACTACCACTACATCTCCTCGCAGGGCTTTCCGATTGAAGGCTGGGCTGTTGTATACTACATAACTCACCTGCTAAAGGGCGCACTCCTGTTCATCACCATCGCCCTCATCGGCACTGGCTGGGCCTTCATCAAGCACATCCTGTCTGATAAAGACAAGAAGATCTTCATGATTGTCATCCCGCTCCAGGTCCTGGCGAATGTGGCCTACATCATCATAGAGTCCACTGAGGAGGGCACAACTGAGTATGGCCTATGGAAGGACTCTCTGTTCCTGGTTGACTTGCTTTGCTGTGGCGCCATCCTCTTCCCAGTGGTGTGGTCAATCAGGCATTTACAAGAAGCCTCCGCCACAGATGGAAAAGCTGCCATTAACTTAGCGAAGCTGAGGCTTTTCAGACATTACTACGTCTTGATTGTGTGCTACATCTACTTTACCAGGATCATCGCCTTCCTTCTCAAGTTTGCTGTTCCATTCCAGTGGAAGTGGCTCTACCAG
Peptide sequence:
MIVIPLQVLANVAYIIIESTEEGTTEYGLWKDSLFLVDLLCCGAILFPVVWSIRHLQEASATDGKAAINLAKLRLFRHYYVLIVCYIYFTRIIAFLLKFAVPFQWKWLYQIDYHYISSQGFPIEGWAVVYYITHLLKGALLFITIALIGTGWAFIKHILSDKDKKIFMIVIPLQVLANVAYIIIESTEEGTTEYGLWKDSLFLVDLLCCGAILFPVVWSIRHLQEASATDGKAAINLAKLRLFRHYYVLIVCYIYFTRIIAFLLKFAVPFQWKWLYQ
IRESfinder result
IRESfinder score
0.654430685
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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