top of page
mmu_circGosr1_393
Basic information of circular RNA
PanCircBase ID:
mmu_circGosr1_393
mm39_Chr. Position ID:
chr11|76628207|76645626|-
Gene name:
Gosr1
Transcript:
ENSMUST00000010536.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
5
Exon/intron indexes:
7,6,5,4,3
Exon/intron offsets:
0,11126,13429,16987,17331
Genomic length:
17419
Exon/intron sizes in nt:
30,75,92,108,88
Flanking exon/introns:
chr11:76625477-76628207|chr11:76645626-76652060
Splice length:
393
Other database IDs:
circAtlas: mmu-Gosr1_0002
circBase: hsa_circ_0042842, circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_20012
Human Ortholog IDs:
Mature spliced Sequence:
TTCTGACACAACACCGCTATTAAATGGATCAAGCCAAGACAGAATGTTTGAGACAATGGCAATTGAAATTGAACAGCTTTTGGCAAGGCTTACAGGAGTAAACGACAAAATGGCAGAGTACACCCACAGTGCAGGGGTGCCCTCCCTGAATGCAGCCCTGATGCACACGCTGCAGCGACACAGAGACATTCTGCAGGATTATACACACGAATTTCATAAAACCAAAGCAAACTTTACGGCAATACGGGAAAGGGAGAATCTCATGGGATCAGTACGGAAAGATATTGAGTCATATAAAAGCGGGTCTGGAGTAAACAACAGGAGAACGGAACTGTTTCTGAAAGAGCATGACCACCTTCGAAACTCTGATCGTCTGATAGAAGAAACAATAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGAGCATGACCACCTTCGAA
59.02
GCCTTGCCAAAAGCTGTTCA
59.9
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAGAGCATGACCACCTTCGA
59.02
GCCTTGCCAAAAGCTGTTCA
59.9
141
PCR template sequence:
ATAAAAGCGGGTCTGGAGTAAACAACAGGAGAACGGAACTGTTTCTGAAAGAGCATGACCACCTTCGAAACTCTGATCGTCTGATAGAAGAAACAATAAGTTCTGACACAACACCGCTATTAAATGGATCAAGCCAAGACAGAATGTTTGAGACAATGGCAATTGAAATTGAACAGCTTTTGGCAAGGCTTACAGGAGTA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-383-5p(1)
siRNAs for circular RNA silencing
Junction sequence
AAGAAACAATAAGTTCTGACACAACA
siRNA sets
TTGTGTCAGAACTTATTGT, GTTGTGTCAGAACTTATTG, TGTCAGAACTTATTGTTTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCGOSR1_393_ORF_1
0.9992
0.195504526
0.939533695
741
ORF sequence:
ATGTTTGAGACAATGGCAATTGAAATTGAACAGCTTTTGGCAAGGCTTACAGGAGTAAACGACAAAATGGCAGAGTACACCCACAGTGCAGGGGTGCCCTCCCTGAATGCAGCCCTGATGCACACGCTGCAGCGACACAGAGACATTCTGCAGGATTATACACACGAATTTCATAAAACCAAAGCAAACTTTACGGCAATACGGGAAAGGGAGAATCTCATGGGATCAGTACGGAAAGATATTGAGTCATATAAAAGCGGGTCTGGAGTAAACAACAGGAGAACGGAACTGTTTCTGAAAGAGCATGACCACCTTCGAAACTCTGATCGTCTGATAGAAGAAACAATAAGTTCTGACACAACACCGCTATTAAATGGATCAAGCCAAGACAGAATGTTTGAGACAATGGCAATTGAAATTGAACAGCTTTTGGCAAGGCTTACAGGAGTAAACGACAAAATGGCAGAGTACACCCACAGTGCAGGGGTGCCCTCCCTGAATGCAGCCCTGATGCACACGCTGCAGCGACACAGAGACATTCTGCAGGATTATACACACGAATTTCATAAAACCAAAGCAAACTTTACGGCAATACGGGAAAGGGAGAATCTCATGGGATCAGTACGGAAAGATATTGAGTCATATAAAAGCGGGTCTGGAGTAAACAACAGGAGAACGGAACTGTTTCTGAAAGAGCATGACCACCTTCGAAACTCTGATCGTCTGATAGAAGAAACAATA
Peptide sequence:
MFETMAIEIEQLLARLTGVNDKMAEYTHSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFTAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISSDTTPLLNGSSQDRMFETMAIEIEQLLARLTGVNDKMAEYTHSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFTAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETI
IRESfinder result
IRESfinder score
0.340658715
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page