top of page
mmu_circGm49333_369
Basic information of circular RNA
PanCircBase ID:
mmu_circGm49333_369
mm39_Chr. Position ID:
chr16|20457409|20459475|+
Gene name:
Gm49333
Transcript:
ENSMUST00000120394.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
10,11,12
Exon/intron offsets:
0,512,1955
Genomic length:
2066
Exon/intron sizes in nt:
14,31,15,111
Flanking exon/introns:
chr16:20456599-20457409|chr16:20459475-20461024
Splice length:
369
Other database IDs:
circAtlas: mmu-Ece2_0006
Human Ortholog IDs:
Mature spliced Sequence:
GCTCTCGCGCCCGCCGTGGACTGGCTGGAGTTCCTTTCTTTCTTGTTATCGCCACTTGAGTTGGGTGATTCTGAGCCTGTGGTGGTGTATGGGACTGAGTATTTACAGCAGGTGTCGGAGCTCATCAACCGTACTGAACCAAGCATCCTGAACAATTACCTAATTTGGAACCTGGTACAGAAGACGACCTCAAGCCTTGACCAGCGCTTTGAGACTGCACAGGAGAAACTGCTGGAGACCCTCTACGGTACCAAGAAGTCCTGCACTCCGAGGTGGCAGACCTGCATCTCCAATACAGATGATGCCCTTGGCTTTGCTCTGGGTTCACTCTTTGTGAAAGCCACATTTGACCGACAAAGCAAGGAAATC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TTGGCTTTGCTCTGGGTTCA
60.11
GTCCCATACACCACCACAGG
60.04
157
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TTGGCTTTGCTCTGGGTTCA
60.11
CACCACCACAGGCTCAGAAT
59.96
149
PCR template sequence:
GAGGTGGCAGACCTGCATCTCCAATACAGATGATGCCCTTGGCTTTGCTCTGGGTTCACTCTTTGTGAAAGCCACATTTGACCGACAAAGCAAGGAAATCGCTCTCGCGCCCGCCGTGGACTGGCTGGAGTTCCTTTCTTTCTTGTTATCGCCACTTGAGTTGGGTGATTCTGAGCCTGTGGTGGTGTATGGGACTGAGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-484(1)
siRNAs for circular RNA silencing
Junction sequence
AAGCAAGGAAATCGCTCTCGCGCCCG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.585803633
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page