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mmu_circGm45062_114
Basic information of circular RNA
PanCircBase ID:
mmu_circGm45062_114
mm39_Chr. Position ID:
chr6|8573184|8573298|+
Gene name:
Gm45062
Transcript:
ENSMUST00000162564.7
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
7
Exon/intron offsets:
0
Genomic length:
114
Exon/intron sizes in nt:
114
Flanking exon/introns:
chr6:8558586-8573184|chr6:8573298-8579586
Splice length:
114
Other database IDs:
circBase: hsa_circ_0134786, CIRCpedia: HSA_CIRCpedia_144973
Human Ortholog IDs:
Mature spliced Sequence:
ATTGCCAAACTTAGGCAACAGCTACAACGCAGCAAGCAAAGTAGTCGGCATAGTAAAGAGAAGGACAGACAGTCACCTCTCCATGGCAACCACATAACAATCAGTCATACTCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCTCTCCATGGCAACCACAT
60.03
TGCGTTGTAGCTGTTGCCTA
59.97
70
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GACAGTCACCTCTCCATGGC
60.11
TGCGTTGTAGCTGTTGCCTA
59.97
78
PCR template sequence:
GAGAAGGACAGACAGTCACCTCTCCATGGCAACCACATAACAATCAGTCATACTCAGATTGCCAAACTTAGGCAACAGCTACAACGCAGCAAGCAAAGTAGTCGGCATAGTAAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-134-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CAGTCATACTCAGATTGCCAAACTTA
siRNA sets
TAAGTTTGGCAATCTGAGT, AAGTTTGGCAATCTGAGTA, TTTGGCAATCTGAGTATGA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.175564448
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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