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mmu_circGm42417_336
Basic information of circular RNA
PanCircBase ID:
mmu_circGm42417_336
mm39_Chr. Position ID:
chr1|36573067|36575637|-
Gene name:
Gm42417
Transcript:
ENSMUST00000191849.6
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
4,3,2
Exon/intron offsets:
0,304,2510
Genomic length:
2570
Exon/intron sizes in nt:
129,147,60
Flanking exon/introns:
chr1:36571787-36573067|chr1:36575637-36578292
Splice length:
336
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTCACGCTGGAGTTCAGGGCACAGCGGAGTGAAAAGCATTCCTGGCTTCTCAAGAATTAGGTAAGTGGAGAAAGAGTTGATAGGAAAGCGTTGGAGTTTGGACGTGGAGTTCCTGATCCTGGAGGCTGGCCTAGTGGCTGGACGCTGGGACCCCAAGAGGCTGTGGCCCGGGAGAAACTAAAGTTGGAGGAAGAGAAAAGGAAGAAACTGGAAAGATTTAACAGCTCCAGACTGACTCTGGACAATCTGACAGACTTGGAAAACTTGGTTCAAAGACGAAGAAAAAAACGACAGAGACACAAAGTCCCCCCCAGGGAACCTGAGTCTGGGGCTGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGACAATCTGACAGACTTGGA
59.03
GGAATGCTTTTCACTCCGCTG
60.14
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGGACAATCTGACAGACTTGGA
59.03
CAGGAATGCTTTTCACTCCGC
60.14
142
PCR template sequence:
TCTGGACAATCTGACAGACTTGGAAAACTTGGTTCAAAGACGAAGAAAAAAACGACAGAGACACAAAGTCCCCCCCAGGGAACCTGAGTCTGGGGCTGAGGTCACGCTGGAGTTCAGGGCACAGCGGAGTGAAAAGCATTCCTGGCTTCTCAAGAATTAGGTAAGTGGAGAAAGAGTTGATAGGAAAGCGTTGGAGTTTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
GTCTGGGGCTGAGGTCACGCTGGAGT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.536762073
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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