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mmu_circGm34237_275
Basic information of circular RNA
PanCircBase ID:
mmu_circGm34237_275
mm39_Chr. Position ID:
chr12|11921835|11926053|+
Gene name:
Gm34237
Transcript:
ENSMUST00000220575.2
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
5,6
Exon/intron offsets:
0,4124
Genomic length:
4218
Exon/intron sizes in nt:
181,94
Flanking exon/introns:
chr12:11889371-11921835|chr12:11926053-11934879
Splice length:
275
Other database IDs:
circBase: mmu_circ_0003797, circAtlas: mmu-intergenic_001536
Human Ortholog IDs:
Mature spliced Sequence:
GGGGACGTGGCGCTATTGTGAGAGAGGCATCTATTTGGAACCTGAGTGTGGCCCCTAGGAATGAAGACCAATCTCTGTTCAAGAGACCACTAGAAAAATTGGCCTCATTTTTTCTGTGACAACAAGAAGCTGAGTTCGGCCAACAACCTGCAGAAGTTTAGAAGTGATCACTGAGCTCCAGGGAAAAGGAAGAAAGCTACCAAGACAAATAAGTTTGGTGTAAAGTGGTCTCTGGTTCAGTGGCCATGGAGAAGAGGAATGAGCTAGCACTGAGT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCCAGGGAAAAGGAAGAAAGCT
59.55
CATTCCTAGGGGCCACACTC
59.82
162
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCCAGGGAAAAGGAAGAAAGCT
59.55
ATTCCTAGGGGCCACACTCA
60.25
161
PCR template sequence:
CTCCAGGGAAAAGGAAGAAAGCTACCAAGACAAATAAGTTTGGTGTAAAGTGGTCTCTGGTTCAGTGGCCATGGAGAAGAGGAATGAGCTAGCACTGAGTGGGGACGTGGCGCTATTGTGAGAGAGGCATCTATTTGGAACCTGAGTGTGGCCCCTAGGAATGAAGACCAATCTCTGTTCAAGAGACCACTAGAAAAATT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-207(1)
siRNAs for circular RNA silencing
Junction sequence
GCTAGCACTGAGTGGGGACGTGGCGC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.694212865
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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