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mmu_circGm19705_239
Basic information of circular RNA
PanCircBase ID:
mmu_circGm19705_239
mm39_Chr. Position ID:
chr1|136602876|136609300|+
Gene name:
Gm19705
Transcript:
ENSMUST00000180495.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
3,4
Exon/intron offsets:
0,6330
Genomic length:
6424
Exon/intron sizes in nt:
145,94
Flanking exon/introns:
chr1:136600948-136602876|chr1:136609300-136616481
Splice length:
239
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
CAGATCTCGCAAAAGGGGAGGAAGGCCTTCACCGCTGAACCCGAGCTTTGCCATTTCGAAGTGCTGAGTCACCTCGTCCTCTCAGGGTCAGACACTTTCACGCAGGAAACGTCCTGCAGAGCACCGCAGCGGGAGCACCGAGCTGGTGTATAGGTGTGAACCAAGTGCACGTCTAGTTCCCTTGGAGGCCAGAAAGAAGGCGGTGTCAGATCCCCAGGAACCATAGTTACAGATGGTTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GTGTGAACCAAGTGCACGTC
59.97
TCTGACCCTGAGAGGACGAG
60.03
178
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGTGAACCAAGTGCACGTCT
60.11
TCTGACCCTGAGAGGACGAG
60.03
177
PCR template sequence:
GAGCTGGTGTATAGGTGTGAACCAAGTGCACGTCTAGTTCCCTTGGAGGCCAGAAAGAAGGCGGTGTCAGATCCCCAGGAACCATAGTTACAGATGGTTGCAGATCTCGCAAAAGGGGAGGAAGGCCTTCACCGCTGAACCCGAGCTTTGCCATTTCGAAGTGCTGAGTCACCTCGTCCTCTCAGGGTCAGACACTTTCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-670-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TTACAGATGGTTGCAGATCTCGCAAA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.372730199
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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