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mmu_circGm1604b_120
Basic information of circular RNA
PanCircBase ID:
mmu_circGm1604b_120
mm39_Chr. Position ID:
chr17|7296978|7346909|+
Gene name:
Gm1604b
Transcript:
ENSMUST00000097422.6
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
2,3
Exon/intron offsets:
0,49871
Genomic length:
49931
Exon/intron sizes in nt:
60,60
Flanking exon/introns:
chr17:7293298-7296978|chr17:7346909-7354692
Splice length:
120
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
ACCGCCGAAGAGGAACTCGCCTTGGATGTTGAGCCCACCCCAGAAGATACCACAGAAGAAGGCAAAGGAGACACAACCTCCTCAGCTGAGACGCAGCCAGCCTCCTCATCGTCCGCAGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGCAAAGGAGACACAACCTC
58.76
TTCTTCTGTGGTATCTTCTGGGG
59.48
120
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGCAAAGGAGACACAACCTC
58.76
TTCTTCTGTGGTATCTTCTGGG
57.17
120
PCR template sequence:
GGCAAAGGAGACACAACCTCCTCAGCTGAGACGCAGCCAGCCTCCTCATCGTCCGCAGAGACCGCCGAAGAGGAACTCGCCTTGGATGTTGAGCCCACCCCAGAAGATACCACAGAAGAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
ATCGTCCGCAGAGACCGCCGAAGAGG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCGM1604B_120_ORF_1
1.3126
0.174008838
0.363729577
213
ORF sequence:
ATGTTGAGCCCACCCCAGAAGATACCACAGAAGAAGGCAAAGGAGACACAACCTCCTCAGCTGAGACGCAGCCAGCCTCCTCATCGTCCGCAGAGACCGCCGAAGAGGAACTCGCCTTGGATGTTGAGCCCACCCCAGAAGATACCACAGAAGAAGGCAAAGGAGACACAACCTCCTCAGCTGAGACGCAGCCAGCCTCCTCATCGTCCGCAG
Peptide sequence:
MLSPPQKIPQKKAKETQPPQLRRSQPPHRPQRPPKRNSPWMLSPPQKIPQKKAKETQPPQLRRSQPPHRPQ
IRESfinder result
IRESfinder score
0.197304662
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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