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mmu_circGlmn_735
Basic information of circular RNA
PanCircBase ID:
mmu_circGlmn_735
mm39_Chr. Position ID:
chr5|107705147|107718183|-
Gene name:
Glmn
Transcript:
ENSMUST00000078021.13
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
9
Exon/intron indexes:
16,15,14,13,12,11,10,9,8
Exon/intron offsets:
0,636,1180,3594,3771,4560,4963,5469,12848
Genomic length:
13036
Exon/intron sizes in nt:
6,41,07,85,74,42,90,31,00,000
Flanking exon/introns:
chr5:107698961-107705147|chr5:107718183-107720145
Splice length:
735
Other database IDs:
circBase: hsa_circ_0013148, circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_33153
Human Ortholog IDs:
Mature spliced Sequence:
GGATTTTTATCAAAAATTGGACACCCTGTCCCCCAAATTATTCTTAATCATGGAAGGAAAAAAAGGACTTGGGATTACCTTGAATTTGAAGAAGAAGAAGACAAACAACTGGCAGAGTCTGTGGCTTCTCTGACATATCTAGTATTTGTTCAGGGCATCGGTATTGATCAGCTGCCCATGGTCTTAAGCCCATCGTACCTTCTGCAGTTGAACATGGAGCATATTGAAGTGTTTCTGCAAAGAACAGAACAGTCTATTTACTCCAAAGGATTGGAACTTCTGGAGACTAGCTTATTGAGATTAGAAGACAACAGCCTATGTTATCAGTACTTAGAAATCAAGAGTTTTCTTGCTGTGCCTCAGGGCTTAGTCAAAGTTATGACACTTTGCCCCATTGAGACATTGAGGAAAAAAGGTTTATCTATGCTTCAGCTGTTTATTGACAAGTTGGATTCACAAGGCAAATATACATTATTTAGGTGCTTACTAAATACAAGTAATCACTCAGGAGTGGAAGCCTTTGTAATTCAAAACATCAAAAATCAGATTGATTTATCATTTAAGAAAACATATAACAAATGGTTTGCAGGAGCACAGCTGATCTCTCTGTTAGACCTGGTCCTGTCTCTCCCTGAGGGCGCTGAGACAGACTTACTGCAGAACTCAGACAGGATTATGGCTTCATTAAATTTATTGAGGTATTTGGTTATCAAAGATAATGAAGATGACAATCAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGGCGCTGAGACAGACTTAC
60.46
TAATTTGGGGGACAGGGTGTC
59.64
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGGCGCTGAGACAGACTTAC
60.46
TAATTTGGGGGACAGGGTGT
58.54
140
PCR template sequence:
GGGCGCTGAGACAGACTTACTGCAGAACTCAGACAGGATTATGGCTTCATTAAATTTATTGAGGTATTTGGTTATCAAAGATAATGAAGATGACAATCAAGGATTTTTATCAAAAATTGGACACCCTGTCCCCCAAATTATTCTTAATCATGGAAGGAAAAAAAGGACTTGGGATTACCTTGAATTTGAAGAAGAAGAAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
8
Interacting miRNAs (#binding sites)
mmu-miR-216a-5p(1), mmu-miR-196a-5p(1), mmu-miR-185-5p(1), mmu-miR-297a-5p(1), mmu-miR-190b-5p(1), mmu-miR-5101(1), mmu-miR-544-5p(1), mmu-miR-7a-1-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AGATGACAATCAAGGATTTTTATCAA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCGLMN_735_ORF_1
0.7584
-0.03509963
0.995131453
1293
ORF sequence:
ATGGTCTTAAGCCCATCGTACCTTCTGCAGTTGAACATGGAGCATATTGAAGTGTTTCTGCAAAGAACAGAACAGTCTATTTACTCCAAAGGATTGGAACTTCTGGAGACTAGCTTATTGAGATTAGAAGACAACAGCCTATGTTATCAGTACTTAGAAATCAAGAGTTTTCTTGCTGTGCCTCAGGGCTTAGTCAAAGTTATGACACTTTGCCCCATTGAGACATTGAGGAAAAAAGGTTTATCTATGCTTCAGCTGTTTATTGACAAGTTGGATTCACAAGGCAAATATACATTATTTAGGTGCTTACTAAATACAAGTAATCACTCAGGAGTGGAAGCCTTTGTAATTCAAAACATCAAAAATCAGATTGATTTATCATTTAAGAAAACATATAACAAATGGTTTGCAGGAGCACAGCTGATCTCTCTGTTAGACCTGGTCCTGTCTCTCCCTGAGGGCGCTGAGACAGACTTACTGCAGAACTCAGACAGGATTATGGCTTCATTAAATTTATTGAGGTATTTGGTTATCAAAGATAATGAAGATGACAATCAAGGATTTTTATCAAAAATTGGACACCCTGTCCCCCAAATTATTCTTAATCATGGAAGGAAAAAAAGGACTTGGGATTACCTTGAATTTGAAGAAGAAGAAGACAAACAACTGGCAGAGTCTGTGGCTTCTCTGACATATCTAGTATTTGTTCAGGGCATCGGTATTGATCAGCTGCCCATGGTCTTAAGCCCATCGTACCTTCTGCAGTTGAACATGGAGCATATTGAAGTGTTTCTGCAAAGAACAGAACAGTCTATTTACTCCAAAGGATTGGAACTTCTGGAGACTAGCTTATTGAGATTAGAAGACAACAGCCTATGTTATCAGTACTTAGAAATCAAGAGTTTTCTTGCTGTGCCTCAGGGCTTAGTCAAAGTTATGACACTTTGCCCCATTGAGACATTGAGGAAAAAAGGTTTATCTATGCTTCAGCTGTTTATTGACAAGTTGGATTCACAAGGCAAATATACATTATTTAGGTGCTTACTAAATACAAGTAATCACTCAGGAGTGGAAGCCTTTGTAATTCAAAACATCAAAAATCAGATTGATTTATCATTTAAGAAAACATATAACAAATGGTTTGCAGGAGCACAGCTGATCTCTCTGTTAGACCTGGTCCTGTCTCTCCCTGAGGGCGCTGAGACAGACTTACTGCAGAACTCAGACAGGATTATGGCTTCATTAAATTTATTGAGGTATTTGGTTATCAAAGATAATGAAGATGACAATCAA
Peptide sequence:
MVLSPSYLLQLNMEHIEVFLQRTEQSIYSKGLELLETSLLRLEDNSLCYQYLEIKSFLAVPQGLVKVMTLCPIETLRKKGLSMLQLFIDKLDSQGKYTLFRCLLNTSNHSGVEAFVIQNIKNQIDLSFKKTYNKWFAGAQLISLLDLVLSLPEGAETDLLQNSDRIMASLNLLRYLVIKDNEDDNQGFLSKIGHPVPQIILNHGRKKRTWDYLEFEEEEDKQLAESVASLTYLVFVQGIGIDQLPMVLSPSYLLQLNMEHIEVFLQRTEQSIYSKGLELLETSLLRLEDNSLCYQYLEIKSFLAVPQGLVKVMTLCPIETLRKKGLSMLQLFIDKLDSQGKYTLFRCLLNTSNHSGVEAFVIQNIKNQIDLSFKKTYNKWFAGAQLISLLDLVLSLPEGAETDLLQNSDRIMASLNLLRYLVIKDNEDDNQ
IRESfinder result
IRESfinder score
0.871723611
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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