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mmu_circGas5_81
Basic information of circular RNA
PanCircBase ID:
mmu_circGas5_81
mm39_Chr. Position ID:
chr1|160864389|160865842|+
Gene name:
Gas5
Transcript:
ENSMUST00000161005.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
6,7
Exon/intron offsets:
0,1405
Genomic length:
1453
Exon/intron sizes in nt:
33,48
Flanking exon/introns:
chr1:160864149-160864389|chr1:160865842-160866026
Splice length:
81
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGGAGTTTGAGGCTGGATAGACAGTTTGAAAGGGCTCCTGTGACAAGTGGACATGCAGTGACTGCACCTTTGTTTCTGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGACAAGTGGACATGCAGTGA
59.86
TATCCAGCCTCAAACTCCACC
59.44
60
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGACAAGTGGACATGCAGTGA
59.86
AGGAGCCCTTTCAAACTGTCT
59.22
80
PCR template sequence:
TGACAAGTGGACATGCAGTGACTGCACCTTTGTTTCTGAGGTGGAGTTTGAGGCTGGATAGACAGTTTGAAAGGGCTCCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-18a-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CTTTGTTTCTGAGGTGGAGTTTGAGG
siRNA sets
AAACTCCACCTCAGAAACA, AACTCCACCTCAGAAACAA, CAAACTCCACCTCAGAAAC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.826852798
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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