top of page

mmu_circFryl_1076

Basic information of circular RNA
PanCircBase ID:

mmu_circFryl_1076

mm39_Chr. Position ID:

chr5|73179844|73198936|-

Gene name:

Fryl

Transcript:

ENSMUST00000202697.4

CircRNA type:

Exonic circular (circ)RNA

Exon/Intron count:

7

Exon/intron indexes:

20,19,18,17,16,15,14

Exon/intron offsets:

0,1386,4814,10256,11094,12444,18844

Genomic length:

19092

Exon/intron sizes in nt:

19,11,11,69,99,15,02,00,000

Flanking exon/introns:

chr5:73179640-73179844|chr5:73198936-73204862

Splice length:

1076

Other database IDs:

CIRCpedia: MMU_CIRCpedia_28260, circAtlas: mmu-Fryl_0062

Human Ortholog IDs:
Mature spliced Sequence:

GGTACAAGTTCAGTATTAAAGGAGGAACACGTTACAGCCTTTGAAGACGAAGGGTCATACGTTATTCCAGACCAACAGGACCCGCTAGTATGTCGAGGGATTCTTGATTTAGAGGAAACTGACATGCCAGAGCCTCTGGCCCCTGAAAGCTACCCCGAGTCCATCTGTGAAGAGGATGTCACCTTGGCTTTGAAAGAGCTGGATGAACGGTGTGAGGAGGAAGAGGCTGACTTCTCAGGGTTGTCCAGTCAAGAGGAAGATGAACAAGACGGCTTTCCAGAAGTGCAAACCTCGCCTCTCCCGACCCCCTTTCTGTCTGCCATAATAGCAGCTTTCCAGCCAATGGCTTACGAGGACGAGGAAGAAGCGTGGCGTTGCCATGTCAATCAGACGCTGTCGGACACAGACGGGTCCTGTGCGGTGTTTACTTTCCACGTGTTTTCAAGACTGTTTCAGACAATTCAAAGGAAGTTTGGAGAGATAACGAAGGAGGCTGTGGGCTTTCTTGGTGAGAGTCTACAGCGCATTGGTACCAAGTTTAAAAGCTCATTGGAAGTGATGATGGCCTGTTCTGAATGCCCCACTGTCTTTGTGGATGCCGAAACGCTGATGGCGTGTGGCTTGCTGGAAACACTCAAGTTTGGCGTCTTGGAGCTGCAGGAACATCTGGATACTTACACCACCAAGAGAGAAGCAGCCGAGCAGTGGCTAGACAACTGCAAGAGGACATTCGGTGCCAACGAAGACATATACAGGATGAACACCAACGCGCATGAGCTGGAGCTCTGCAGAAGGTTGTACCGGCTGCACTTTCAGCTGCTGCTTCTGTTCCAGGCCTACTGCAAACTCATCAACCAAGTAAATACCATCAAGAATGAAGCAGAGGTCATCAACATGTCAGAAGAACTTGCCCAGCTGGAAGGCATCCTTAAGGAAGCTGAGGCCGCTTCGGAAAATGAAGAAATTGATATCTCCAAAGCGGCCCAGACCACGATAGAAACTGCCATTCACTCTCTGATCGAAACCTTGAAGAACAAGGAATTTGTATCAGCTGTGGCACAAGTCAAAGCTTTCAG

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

GGCCCAGACCACGATAGAAA

59.46

GGGTCCTGTTGGTCTGGAAT

59.3

179

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

GGCCCAGACCACGATAGAAA

59.46

ACCCTTCGTCTTCAAAGGCT

59.23

151

PCR template sequence:

AAGCGGCCCAGACCACGATAGAAACTGCCATTCACTCTCTGATCGAAACCTTGAAGAACAAGGAATTTGTATCAGCTGTGGCACAAGTCAAAGCTTTCAGGGTACAAGTTCAGTATTAAAGGAGGAACACGTTACAGCCTTTGAAGACGAAGGGTCATACGTTATTCCAGACCAACAGGACCCGCTAGTATGTCGAGGGA

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

23

Interacting miRNAs (#binding sites)

mmu-miR-20b-5p(1), mmu-miR-106a-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-429-3p(1), mmu-miR-200b-3p(1), mmu-miR-223-3p(1), mmu-miR-30e-5p(1), mmu-miR-15b-5p(1), mmu-miR-106b-5p(1), mmu-miR-30a-5p(1), mmu-miR-30c-5p(1), mmu-miR-18a-5p(1), mmu-miR-132-3p(1), mmu-miR-125b-5p(1), mmu-miR-30d-5p(1), mmu-miR-30b-5p(1), mmu-miR-351-5p(1), mmu-miR-125a-5p(1), mmu-miR-212-3p(1), mmu-miR-383-5p(1), mmu-miR-697(1)

siRNAs for circular RNA silencing
Junction sequence

TCAAAGCTTTCAGGGTACAAGTTCAG

siRNA sets

GAACTTGTACCCTGAAAGC, AACTTGTACCCTGAAAGCT, TGTACCCTGAAAGCTTTGA

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

CIRCFRYL_1076_ORF_1

1.0635

0.341010538

0.993896904

972

ORF sequence:

ATGCCAGAGCCTCTGGCCCCTGAAAGCTACCCCGAGTCCATCTGTGAAGAGGATGTCACCTTGGCTTTGAAAGAGCTGGATGAACGGTGTGAGGAGGAAGAGGCTGACTTCTCAGGGTTGTCCAGTCAAGAGGAAGATGAACAAGACGGCTTTCCAGAAGTGCAAACCTCGCCTCTCCCGACCCCCTTTCTGTCTGCCATAATAGCAGCTTTCCAGCCAATGGCTTACGAGGACGAGGAAGAAGCGTGGCGTTGCCATGTCAATCAGACGCTGTCGGACACAGACGGGTCCTGTGCGGTGTTTACTTTCCACGTGTTTTCAAGACTGTTTCAGACAATTCAAAGGAAGTTTGGAGAGATAACGAAGGAGGCTGTGGGCTTTCTTGGTGAGAGTCTACAGCGCATTGGTACCAAGTTTAAAAGCTCATTGGAAGTGATGATGGCCTGTTCTGAATGCCCCACTGTCTTTGTGGATGCCGAAACGCTGATGGCGTGTGGCTTGCTGGAAACACTCAAGTTTGGCGTCTTGGAGCTGCAGGAACATCTGGATACTTACACCACCAAGAGAGAAGCAGCCGAGCAGTGGCTAGACAACTGCAAGAGGACATTCGGTGCCAACGAAGACATATACAGGATGAACACCAACGCGCATGAGCTGGAGCTCTGCAGAAGGTTGTACCGGCTGCACTTTCAGCTGCTGCTTCTGTTCCAGGCCTACTGCAAACTCATCAACCAAGTAAATACCATCAAGAATGAAGCAGAGGTCATCAACATGTCAGAAGAACTTGCCCAGCTGGAAGGCATCCTTAAGGAAGCTGAGGCCGCTTCGGAAAATGAAGAAATTGATATCTCCAAAGCGGCCCAGACCACGATAGAAACTGCCATTCACTCTCTGATCGAAACCTTGAAGAACAAGGAATTTGTATCAGCTGTGGCACAAGTCAAAGCTTTCAGGGTACAAGTTCAGTATTAA

Peptide sequence:

MPEPLAPESYPESICEEDVTLALKELDERCEEEEADFSGLSSQEEDEQDGFPEVQTSPLPTPFLSAIIAAFQPMAYEDEEEAWRCHVNQTLSDTDGSCAVFTFHVFSRLFQTIQRKFGEITKEAVGFLGESLQRIGTKFKSSLEVMMACSECPTVFVDAETLMACGLLETLKFGVLELQEHLDTYTTKREAAEQWLDNCKRTFGANEDIYRMNTNAHELELCRRLYRLHFQLLLLFQAYCKLINQVNTIKNEAEVINMSEELAQLEGILKEAEAASENEEIDISKAAQTTIETAIHSLIETLKNKEFVSAVAQVKAFRVQVQY

IRESfinder result

IRESfinder score

0.343237595

IRES/non IRES

non-IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

logo.png

Institute of Life sciences, Bhubaneswar, India

bottom of page