top of page
mmu_circFlvcr1_826
Basic information of circular RNA
PanCircBase ID:
mmu_circFlvcr1_826
mm39_Chr. Position ID:
chr1|190741745|190753453|-
Gene name:
Flvcr1
Transcript:
ENSMUST00000085635.6
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
8,7,6,5,4,3,2
Exon/intron offsets:
0,1639,1987,2590,3815,5809,11527
Genomic length:
11708
Exon/intron sizes in nt:
1,15,10,61,11,10,46,81,00,000
Flanking exon/introns:
chr1:190740632-190741745|chr1:190753453-190757573
Splice length:
826
Other database IDs:
circBase: mmu_circ_0008565, CIRCpedia: MMU_CIRCpedia_37863, circAtlas: mmu-Mfsd7b_0003
circBase: hsa_circ_0000183, circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_29911
Human Ortholog IDs:
Mature spliced Sequence:
CTTGGAACTGCAGTTGGTTTTTTGTTGCCACCTGTTTTAGTGCCTGCCTTGGGCACACAGAATAGCACAGGCCTCCTGGCTCACACACAGAATAACACAGACCTCCTGGCTCATAACATCAACACCATGTTTTACGGAACAGCATTTATCTCCACATTTTTATTTTTTTTAACAATAATTGCATTCAAGGAGAAACCTCCGTTGCCTCCAAGTCAGGCTCAGGCAGTTCTTCGAGACAGCCCCCCTGAAGAGTACTCCTACAAGAGTTCTATCTGGAACCTGTGCAGAAACATCCCCTTTGTTCTCCTGCTGGTCAGTTATGGTATCATGACTGGAGCATTTTATTCAATCTCAACATTATTGAATCAAATAATATTGACATATTATGTGGGAGAAGAGGTGAATGCTGGGAGGATCGGGCTGACACTGGTGGTAGCTGGAATGGTGGGCTCTATTCTCTGTGGCTTATGGCTGGACTATACCAAAACCTACAAGCAGACAACTCTGATAGTGTACGTTCTGTCTTTCATTGGAATGCTCATATTCACATTCACACTGAACCTCGGGTACATCATCGTGGTGTTTTTTACTGGTGGGATTCTTGGCTTCTTCATGACTGGTTACCTCCCGCTGGGCTTTGAGTTTGCTGTGGAGATCACCTACCCTGAGTCTGAGGGCATGTCCTCAGGGCTCCTCAACACTGCTGCACAGATACTTGGAATTTTCTTCACATTGGCTCAAGGAAAGATCACAACAGACTATAATAGTCCAGAGGCAGGAAACATTTTCCTTTGTGCCTGGATGTTTGTAGGCATAATTTTAACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGTCCAGAGGCAGGAAACAT
58.63
TTCTGTGTGTGAGCCAGGAG
59.61
153
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGTCCAGAGGCAGGAAACATT
59.29
TTCTGTGTGTGAGCCAGGAG
59.61
153
PCR template sequence:
TTCACATTGGCTCAAGGAAAGATCACAACAGACTATAATAGTCCAGAGGCAGGAAACATTTTCCTTTGTGCCTGGATGTTTGTAGGCATAATTTTAACAGCTTGGAACTGCAGTTGGTTTTTTGTTGCCACCTGTTTTAGTGCCTGCCTTGGGCACACAGAATAGCACAGGCCTCCTGGCTCACACACAGAATAACACAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
9
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(1), mmu-miR-199a-5p(1), mmu-miR-214-3p(1), mmu-miR-351-5p(1), mmu-miR-125a-5p(1), mmu-miR-301b-3p(1), mmu-miR-301a-3p(1), mmu-miR-5101(1), mmu-miR-3065-5p(1)
siRNAs for circular RNA silencing
Junction sequence
ATAATTTTAACAGCTTGGAACTGCAG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCFLVCR1_826_ORF_1
0.8067
0.01279397
0.8570796
765
ORF sequence:
ATGTTTTACGGAACAGCATTTATCTCCACATTTTTATTTTTTTTAACAATAATTGCATTCAAGGAGAAACCTCCGTTGCCTCCAAGTCAGGCTCAGGCAGTTCTTCGAGACAGCCCCCCTGAAGAGTACTCCTACAAGAGTTCTATCTGGAACCTGTGCAGAAACATCCCCTTTGTTCTCCTGCTGGTCAGTTATGGTATCATGACTGGAGCATTTTATTCAATCTCAACATTATTGAATCAAATAATATTGACATATTATGTGGGAGAAGAGGTGAATGCTGGGAGGATCGGGCTGACACTGGTGGTAGCTGGAATGGTGGGCTCTATTCTCTGTGGCTTATGGCTGGACTATACCAAAACCTACAAGCAGACAACTCTGATAGTGTACGTTCTGTCTTTCATTGGAATGCTCATATTCACATTCACACTGAACCTCGGGTACATCATCGTGGTGTTTTTTACTGGTGGGATTCTTGGCTTCTTCATGACTGGTTACCTCCCGCTGGGCTTTGAGTTTGCTGTGGAGATCACCTACCCTGAGTCTGAGGGCATGTCCTCAGGGCTCCTCAACACTGCTGCACAGATACTTGGAATTTTCTTCACATTGGCTCAAGGAAAGATCACAACAGACTATAATAGTCCAGAGGCAGGAAACATTTTCCTTTGTGCCTGGATGTTTGTAGGCATAATTTTAACAGCTTGGAACTGCAGTTGGTTTTTTGTTGCCACCTGTTTTAGTGCCTGCCTTGGGCACACAGAATAG
Peptide sequence:
MFYGTAFISTFLFFLTIIAFKEKPPLPPSQAQAVLRDSPPEEYSYKSSIWNLCRNIPFVLLLVSYGIMTGAFYSISTLLNQIILTYYVGEEVNAGRIGLTLVVAGMVGSILCGLWLDYTKTYKQTTLIVYVLSFIGMLIFTFTLNLGYIIVVFFTGGILGFFMTGYLPLGFEFAVEITYPESEGMSSGLLNTAAQILGIFFTLAQGKITTDYNSPEAGNIFLCAWMFVGIILTAWNCSWFFVATCFSACLGHTE
IRESfinder result
IRESfinder score
0.832826808
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page