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mmu_circFbxo7_295
Basic information of circular RNA
PanCircBase ID:
mmu_circFbxo7_295
mm39_Chr. Position ID:
chr10|85860279|85860574|+
Gene name:
Fbxo7
Transcript:
ENSMUST00000130320.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
2
Exon/intron offsets:
0
Genomic length:
295
Exon/intron sizes in nt:
295
Flanking exon/introns:
chr10:85858008-85860279|chr10:85860574-85864872
Splice length:
295
Other database IDs:
CIRCpedia: MMU_CIRCpedia_216768, circAtlas: mmu-Fbxo7_0003
circBase: hsa_circ_0008832, circAtlas: hsa-FBXO7_0003, CIRCpedia: HSA_CIRCpedia_36497
Human Ortholog IDs:
Mature spliced Sequence:
TTCTGATACCCGATTTGCAATTACATTGAACAACAAGGATGCCCTCACTGGAGATGAAGAGACCTTGGCTTCATATGGGATTGTTTCTGGGGACTTGATATGTTTGGTTCTTGAAGATGACATGCCGGCACCTAACTTACCTTCATCTACAGATACAGAGCATTCCTCACTCCAGGATAATGACCAACCTTCTTTGGCTGCCACCCCAAGTCAGACTAACATCCCAGATGAACAAGGGACTGATTCATCCCAAGGACAGGCCACCCCATTTGATGCCTGGACTGATGACAGTATG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGCCACCCCAAGTCAGACTA
60.47
CCAGTGAGGGCATCCTTGTT
59.96
148
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGCCACCCCAAGTCAGACTA
60.47
CTCCAGTGAGGGCATCCTTG
60.11
150
PCR template sequence:
GGCTGCCACCCCAAGTCAGACTAACATCCCAGATGAACAAGGGACTGATTCATCCCAAGGACAGGCCACCCCATTTGATGCCTGGACTGATGACAGTATGTTCTGATACCCGATTTGCAATTACATTGAACAACAAGGATGCCCTCACTGGAGATGAAGAGACCTTGGCTTCATATGGGATTGTTTCTGGGGACTTGATA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
TGATGACAGTATGTTCTGATACCCGA
siRNA sets
GTATCAGAACATACTGTCA,TATCAGAACATACTGTCAT,TCAGAACATACTGTCATCA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCFBXO7_295_ORF_1
0.9812
0.100813827
0.598807194
474
ORF sequence:
ATGACATGCCGGCACCTAACTTACCTTCATCTACAGATACAGAGCATTCCTCACTCCAGGATAATGACCAACCTTCTTTGGCTGCCACCCCAAGTCAGACTAACATCCCAGATGAACAAGGGACTGATTCATCCCAAGGACAGGCCACCCCATTTGATGCCTGGACTGATGACAGTATGTTCTGATACCCGATTTGCAATTACATTGAACAACAAGGATGCCCTCACTGGAGATGAAGAGACCTTGGCTTCATATGGGATTGTTTCTGGGGACTTGATATGTTTGGTTCTTGAAGATGACATGCCGGCACCTAACTTACCTTCATCTACAGATACAGAGCATTCCTCACTCCAGGATAATGACCAACCTTCTTTGGCTGCCACCCCAAGTCAGACTAACATCCCAGATGAACAAGGGACTGATTCATCCCAAGGACAGGCCACCCCATTTGATGCCTGGACTGATGACAGTATG
Peptide sequence:
MTCRHLTYLHLQIQSIPHSRIMTNLLWLPPQVRLTSQMNKGLIHPKDRPPHLMPGLMTVCSDTRFAITLNNKDALTGDEETLASYGIVSGDLICLVLEDDMPAPNLPSSTDTEHSSLQDNDQPSLAATPSQTNIPDEQGTDSSQGQATPFDAWTDDSM
IRESfinder result
IRESfinder score
0.465533454
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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