top of page
mmu_circFbxo11_1720
Basic information of circular RNA
PanCircBase ID:
mmu_circFbxo11_1720
mm39_Chr. Position ID:
chr17|88299685|88316738|-
Gene name:
Fbxo11
Transcript:
ENSMUST00000130379.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
15
Exon/intron indexes:
22,21,20,19,18,17,16,15,14,13,12,11,10,9,8
Exon/intron offsets:
0,561,889,1479,3778,4009,5073,5255,7275,8514,10494,16336,16558,16752,16946
Genomic length:
17053
Exon/intron sizes in nt:
9,91,09,10,81,11,14,47,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr17:88299603-88299685|chr17:88316738-88318363
Splice length:
1720
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
CACCTGGCAAGGTTGCAGACAAGGTCATCATTGAGAACACTAGAGATTCGACCTTCGTGTTCATGGAAGGCTCTGAAGATGCTTATGTTGGATACATGACGATAAGATTCAACCCTGATGACAAATCTGCTCAGCATCACAACGCACACCACTGCTTAGAGATCACAGTCAACTGCAGCCCTATTATTGACCACTGTATAATCCGCAGCACATGCACAGTTGGTTCTGCAGTGTGTGTCAGTGGCCAGGGGGCGTGTCCCACTATCAAGCATTGTAACATCAGTGACTGTGAAAACGTCGGACTTTATATAACAGATCATGCACAGGGAATATATGAAGATAATGAAATTTCTAATAATGCGTTAGCTGGGATTTGGGTTAAAAATCATGGAAATCCAATTATTAGACGGAATCACATTCATCATGGACGTGATGTTGGTGTGTTCACATTTGATCATGGCATGGGCTACTTTGAAAGTTGCAACATACACAGAAACAGGATAGCAGGCTTTGAGGTAAAAGCCTATGCCAATCCCACAGTGGTTCGATGTGAGATTCACCACGGGCAGACTGGAGGAATATACGTCCACGAGAAAGGAAGAGGACAGTTCATAGAGAACAAGATCTATGCAAACAATTTCGCAGGCGTGTGGATTACCTCAAATAGTGACCCAACAATAAGGGGGAATTCTATATTTAATGGAAATCAAGGAGGAGTTTACATCTTTGGTGACGGACGAGGCCTTATAGAAGGAAATGACATTTATGGTAATGCGTTAGCAGGAATTCAGATCAGGACAAACAGTTGTCCTATTGTTCGACATAACAAAATTCATGATGGACAGCATGGTGGGATTTATGTGCATGAAAAGGGGCAAGGAGTAATAGAAGAGAATGAAGTTTACAGCAACACTCTGGCTGGCGTCTGGGTGACAACTGGCAGCACACCAGTTCTAAGAAGAAACCGGATACACAGTGGCAAGCAGGTTGGTGTTTATTTCTATGACAATGGACATGGTGTTCTAGAAGATAACGACATCTACAATCACATGTATTCAGGGGTTCAGATAAGAACTGGAAGCAACCCCAAAATTAGACGCAACAAAATTTGGGGAGGACAGAATGGTGGAATTCTAGTTTATAATTCTGGTCTAGGCTGTATAGAAGACAATGAAATATTTGACAACGCGATGGCTGGAGTCTGGATTAAAACAGATAGTAATCCTACGCTAAGAAGAAATAAAATCCATGATGGAAGAGATGGTGGCATCTGTATATTTAATGGGGGTCGAGGTCTCCTTGAAGAAAATGATATTTTCAGGAACGCTCAAGCAGGTGTCCTCATCAGCACTAACAGTCATCCAGTATTAAGGAAAAACAGAATATTTGATGGATTTGCTGCAGGTATTGAAATTACAAATCATGCAACTGCAACACTCGAAGGCAATCAGATCTTTAACAACCGATTTGGAGGCTTATTTTTAGCATCTGGTGTTAATGTGACAATGAAAGATAACAAAATAATGAACAATCAAGATGCCATAGAAAAGGCTGTTAGTAGAGGACAATGTCTATATAAAATATCAAGTTATACCAGCTACCCCATGCATGACTTCTACAGATGTCATACTTGTAACACCACAGATCGAAATGCCATATGTGTGAACTGCATTAAGAAGTGCCATCAGGGACATGATGTAGAGTTCATTAGACATGATAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACACCACAGATCGAAATGCCA
60.27
TCCATGAACACGAAGGTCGA
59.04
152
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACACCACAGATCGAAATGCCA
60.27
AGAGCCTTCCATGAACACGA
59.02
159
PCR template sequence:
GATGTCATACTTGTAACACCACAGATCGAAATGCCATATGTGTGAACTGCATTAAGAAGTGCCATCAGGGACATGATGTAGAGTTCATTAGACATGATAGCACCTGGCAAGGTTGCAGACAAGGTCATCATTGAGAACACTAGAGATTCGACCTTCGTGTTCATGGAAGGCTCTGAAGATGCTTATGTTGGATACATGAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
12
Interacting miRNAs (#binding sites)
mmu-miR-210-3p(2), mmu-miR-23b-3p(1), mmu-miR-27b-3p(1), mmu-miR-27a-3p(1), mmu-miR-429-3p(1), mmu-miR-216a-5p(1), mmu-miR-23a-3p(1), mmu-miR-183-5p(1), mmu-miR-297a-5p(1), mmu-miR-377-3p(1), mmu-miR-5101(1), mmu-miR-670-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TTAGACATGATAGCACCTGGCAAGGT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCFBXO11_1720_ORF_1
1.105
0.054969795
0.999917641
1725
ORF sequence:
ATGATAGCACCTGGCAAGGTTGCAGACAAGGTCATCATTGAGAACACTAGAGATTCGACCTTCGTGTTCATGGAAGGCTCTGAAGATGCTTATGTTGGATACATGACGATAAGATTCAACCCTGATGACAAATCTGCTCAGCATCACAACGCACACCACTGCTTAGAGATCACAGTCAACTGCAGCCCTATTATTGACCACTGTATAATCCGCAGCACATGCACAGTTGGTTCTGCAGTGTGTGTCAGTGGCCAGGGGGCGTGTCCCACTATCAAGCATTGTAACATCAGTGACTGTGAAAACGTCGGACTTTATATAACAGATCATGCACAGGGAATATATGAAGATAATGAAATTTCTAATAATGCGTTAGCTGGGATTTGGGTTAAAAATCATGGAAATCCAATTATTAGACGGAATCACATTCATCATGGACGTGATGTTGGTGTGTTCACATTTGATCATGGCATGGGCTACTTTGAAAGTTGCAACATACACAGAAACAGGATAGCAGGCTTTGAGGTAAAAGCCTATGCCAATCCCACAGTGGTTCGATGTGAGATTCACCACGGGCAGACTGGAGGAATATACGTCCACGAGAAAGGAAGAGGACAGTTCATAGAGAACAAGATCTATGCAAACAATTTCGCAGGCGTGTGGATTACCTCAAATAGTGACCCAACAATAAGGGGGAATTCTATATTTAATGGAAATCAAGGAGGAGTTTACATCTTTGGTGACGGACGAGGCCTTATAGAAGGAAATGACATTTATGGTAATGCGTTAGCAGGAATTCAGATCAGGACAAACAGTTGTCCTATTGTTCGACATAACAAAATTCATGATGGACAGCATGGTGGGATTTATGTGCATGAAAAGGGGCAAGGAGTAATAGAAGAGAATGAAGTTTACAGCAACACTCTGGCTGGCGTCTGGGTGACAACTGGCAGCACACCAGTTCTAAGAAGAAACCGGATACACAGTGGCAAGCAGGTTGGTGTTTATTTCTATGACAATGGACATGGTGTTCTAGAAGATAACGACATCTACAATCACATGTATTCAGGGGTTCAGATAAGAACTGGAAGCAACCCCAAAATTAGACGCAACAAAATTTGGGGAGGACAGAATGGTGGAATTCTAGTTTATAATTCTGGTCTAGGCTGTATAGAAGACAATGAAATATTTGACAACGCGATGGCTGGAGTCTGGATTAAAACAGATAGTAATCCTACGCTAAGAAGAAATAAAATCCATGATGGAAGAGATGGTGGCATCTGTATATTTAATGGGGGTCGAGGTCTCCTTGAAGAAAATGATATTTTCAGGAACGCTCAAGCAGGTGTCCTCATCAGCACTAACAGTCATCCAGTATTAAGGAAAAACAGAATATTTGATGGATTTGCTGCAGGTATTGAAATTACAAATCATGCAACTGCAACACTCGAAGGCAATCAGATCTTTAACAACCGATTTGGAGGCTTATTTTTAGCATCTGGTGTTAATGTGACAATGAAAGATAACAAAATAATGAACAATCAAGATGCCATAGAAAAGGCTGTTAGTAGAGGACAATGTCTATATAAAATATCAAGTTATACCAGCTACCCCATGCATGACTTCTACAGATGTCATACTTGTAACACCACAGATCGAAATGCCATATGTGTGAACTGCATTAAGAAGTGCCATCAGGGACATGATGTAGAGTTCATTAGACATGAT
Peptide sequence:
MIAPGKVADKVIIENTRDSTFVFMEGSEDAYVGYMTIRFNPDDKSAQHHNAHHCLEITVNCSPIIDHCIIRSTCTVGSAVCVSGQGACPTIKHCNISDCENVGLYITDHAQGIYEDNEISNNALAGIWVKNHGNPIIRRNHIHHGRDVGVFTFDHGMGYFESCNIHRNRIAGFEVKAYANPTVVRCEIHHGQTGGIYVHEKGRGQFIENKIYANNFAGVWITSNSDPTIRGNSIFNGNQGGVYIFGDGRGLIEGNDIYGNALAGIQIRTNSCPIVRHNKIHDGQHGGIYVHEKGQGVIEENEVYSNTLAGVWVTTGSTPVLRRNRIHSGKQVGVYFYDNGHGVLEDNDIYNHMYSGVQIRTGSNPKIRRNKIWGGQNGGILVYNSGLGCIEDNEIFDNAMAGVWIKTDSNPTLRRNKIHDGRDGGICIFNGGRGLLEENDIFRNAQAGVLISTNSHPVLRKNRIFDGFAAGIEITNHATATLEGNQIFNNRFGGLFLASGVNVTMKDNKIMNNQDAIEKAVSRGQCLYKISSYTSYPMHDFYRCHTCNTTDRNAICVNCIKKCHQGHDVEFIRHD
IRESfinder result
IRESfinder score
0.512731168
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page