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mmu_circFam193a_3164
Basic information of circular RNA
PanCircBase ID:
mmu_circFam193a_3164
mm39_Chr. Position ID:
chr5|34596654|34633151|+
Gene name:
Fam193a
Transcript:
ENSMUST00000180376.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
13
Exon/intron indexes:
8,9,10,11,12,13,14,15,16,17,18,19,20
Exon/intron offsets:
0,810,1037,3990,4268,5351,18594,19687,21784,22773,24663,26263,36415
Genomic length:
36497
Exon/intron sizes in nt:
78,113,243,154,180,252,199,291,283,184,231,874,82
Flanking exon/introns:
chr5:34593942-34596654|chr5:34633151-34642997
Splice length:
3164
Other database IDs:
circAtlas: mmu-Fam193a_0025
circBase: hsa_circ_0068927, circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_48331
Human Ortholog IDs:
Mature spliced Sequence:
ATGACAATGAAAACCAAACAGCGCATGTTAACAGAAGACTGGGAGATTTTTAAACAAAGGAGATTAATTGAAGAACAGTTGACTAATAAGAAAGTGGTTACTGGAGAGAACAACTTCACAGATACCAGGAGGCACATGTTGTCATCTCGGTTGAGCATGCCTGACTGTCCCAACTGCAACTACAGGCGAAGATGTGCTTGTGATGACTGCAGCCTCTCACACATCCTTACTTGTGGTATCATGGACACCCCGGTCACTGATGACATCCACATTCACCAGCTACCACTCCAAGTGGATTCTGCTCCCGACTATCTGTCTGAGATGCGCCCACCTAGTGTGTCATCAGCAAGCTCAGGGTCAGGTTCCAGCTCTCCCATCACAATTCAGCAACATCCTAGACTCATCCTCACAGACAATGGCTCTGCACCAACTTTTTGTAGTGATGATGAAGACGTCGCACCATTGTCAGCTAAGTTTGCTGACATTTATCCGTTGACCAACTACGATGATACCAATGTGGTAGCCAACATGAATGGAATCCACAGCGAACTGAATGGTGGTGGGGAAAACATGGCCCTGAAAGATGAGTCCCCTCAGGTAAGCAGCACCAGCCGTAGTTCTTCAGAGGCTGATGATGAAGATGCTGATGGTGAGAGTAGTGGGGAGCCCCCAGGAGCTCCCAAACAAGAGGAGGCCATAGGAAATGGTAACCCCAAGACAGAAGAGAGTAATGTGAACACTCCACCTCCATCCTACCCAGCTCAGCAGGCAGAACAAACACCGAACACTTGTGAATGCCATGTTTGTAAACAAGAAGCTTCTGGGCTACCAGCATCAGCAATGACTGCTGGAGCCCTGCCTCCTGGCCATCAGTTCCTGAGCCCAGAGAAACCAACACATCCTGCGCTTCACCTGTACCCCCACATCCACGGACATGTACCCTTGCATACTGTTCCACACCTGCCTCGACCGCTCATCCACCCCACCTTGTATCCAGCACCCCCCTTCACACACAGTAAGGCTTTACCGCCAGCACCTGTTCAGAGTCACACAAATAAGCCTCAGGCATTCAATGCATCTCTTCAAGACCATATTTACCCGAGCTGTTTTGGGAACACTCCAGACTGGAATAGTTCTAAATTTATAAGTCTTTGGGAATCAGAAATGATGAATGATAAGAACTGGAACCCTGGCACTTTCTTGCCAGATACAATTTCTGGAAATGATATATTGGGGCCAGTGCTCTCAGAAACAAGACCTGAAGCCCTTCCACCTCCACCCAGCAATGAGGCTCCTGCAGTTTCAGATATCAAAGAAAAGAAAAATGCTGCAAAAAAGAAGTGTTTGTATAATTTCCAAGATGCTTTTATGGAAGCAAATGAAGTTGCCATGGCAAACACAGTTGCCATGGCCACCTCGTCAGCCACATCCTCTGTGTCATGCACAGCCACCACAGTGCAGTCTAGCAGCAGTCAGTTCAAGGTGTCATCCAGAAGACCACCTTCCATAGGTGATGTTTTTCATGGCCTCAACAAAGAGGATCACAGACATTCAGCACCTGCTGCTCCAAGGAACAGCCCCACAGGCCTAGCCCCCCTCCCAGCCTTGTCTCCTTCTGCGCTCTCTCCAGCCTCTACACCTCACCTTCCAAACCTTGCTGCCCCATCATTTCCCAAAACTGCAACCACGGCCCCTGGGTTCGTGGATACACGCAAGAGCTTCTGTCCTACCCCTGTGGCACCCCCGCCCTCCACAACAGATGGCTCCATAAGTGCCCCTCCCAGTGTCTGCAGTGACCCTGACTGTGAAGGGCACCGCTGCGAGAATGGGGTCTATGACCCGCAGCAGGATGATGGGGATGAGAGTGCAGATGAGGACAGCTGCTCCGAGCACAGCTCCAGCACCTCAACTTCCACCAACCAGAAGGAGGGCAAGTACTGTGACTGCTGCTACTGTGAGTTCTTTGGACATGGCGGGCCTCCAGCTGCACCAACAAGTAGAAATTATGCAGAAATGAGGGAAAAACTTCGTTTACGCCTGACTAAGAGGAAGGAAGAACAACCCAAGAAAATGGAGCAGATCTCAGAACGGGAGGGTGTGGTTGACCATCGGAGAGTGGAGGATTTGTTACAGTTTATAAACAGCTCTGAGGCCAAGCCAGTTAGTAGTAGTCGGGCAGCCAAACGAGCAAGGCACAAGCAGAGGAAGCTGGAAGAGAAGGCACGCCTAGAAGCTGAGGCCAGGGCACGGGAGCATCTGCATCATCAGGAGGAGCAAAAGCAGCGGGAAGAAGAGGAGGACGAAGAAGAGGAGGACGAGGAACAGCATTTCAAGGAGGAATTTCAGCGGCTTCAGGAGCTTCAGAAGTTAAGAGCTGCAAAAAAGAAGAAAAAGGATCGGCCAAGTAAAGACTGTTCCAAGTTGGACATGCTTGCTAGAAATTTCCAGGCAGCAACAGAGTCTATCTCTAACTCTGAAAACATCCACAATGGCTCCTTAGAACAAACCGAAGAACCAGAAACCTCATCTCACTCCCCTTCCAGACACATGAACCACTCAGAGCCCAGGCCAGGGCCTGGAGCCAATGGGGATGCTACAGACCCTGTGGACCCCAGAGACCCCTCCAAGCTTCTGCTACCTAAGGAAGTCAATGGGAAGCAGCACGAGCCTCTTGCATTTCTCTTGGACATGATGCATCATCACAAGGAGGGAAATAGCAAGCAAAAGTTAAAGCAAACCAGCAAGACCAGCAATGAGCCAGCCAGGAAGCCCACAGAGCCTCCCAAAACCACAGAGGTACAGCTCAAACCCCGGGCCCAGCCAGAGTTGAAACCTAAAGTAGTTGACCTTGCTCTTCTCACAGAGCAGAAGAGGGAGGAGAGGAAAACCAACAGCAACAACAACAACAAAAAGCAGCTGAGCCACATCAAAGAGGAGAAGCTGAGCACTGTCACTCCTGAGCCACCCTCCCCCAGCCAGCTCCTGCAGAATGGCAGGCTGATTCTGGCCAGTTCTCCTCAGCCCAAGGGCAAGAATAAGAAAAATAAAAAGAAGAAAGGAGACAGAACCAGCAGTTCACTTGATGATGTTTTTCTGCCTAAAGACATCGACCTGGACAGTGTGGATATGGATGAGACTGAGCGGGAGGTGGAGTATTTCAAAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACCAGCAGTTCACTTGATGA
57.06
CCAGTCTTCTGTTAACATGCGC
60.16
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACCAGCAGTTCACTTGATGATG
58.92
CCAGTCTTCTGTTAACATGCGC
60.16
140
PCR template sequence:
GAACCAGCAGTTCACTTGATGATGTTTTTCTGCCTAAAGACATCGACCTGGACAGTGTGGATATGGATGAGACTGAGCGGGAGGTGGAGTATTTCAAAAGATGACAATGAAAACCAAACAGCGCATGTTAACAGAAGACTGGGAGATTTTTAAACAAAGGAGATTAATTGAAGAACAGTTGACTAATAAGAAAGTGGTTA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
37
Interacting miRNAs (#binding sites)
mmu-miR-138-5p(2), mmu-miR-127-5p(2), mmu-miR-370-3p(2), mmu-miR-342-5p(2), mmu-miR-705(2), mmu-miR-300-3p(2), mmu-miR-335-3p(2), mmu-miR-210-3p(1), mmu-miR-20b-5p(1), mmu-miR-16-5p(1), mmu-miR-15a-5p(1), mmu-miR-27b-3p(1), mmu-miR-27a-3p(1), mmu-miR-106a-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-375-3p(1), mmu-miR-31-5p(1), mmu-miR-122-5p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-324-5p(1), mmu-miR-143-3p(1), mmu-miR-503-5p(1), mmu-miR-136-5p(1), mmu-miR-382-5p(1), mmu-miR-362-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-1187(1), mmu-miR-129-5p(1), mmu-miR-207(1), mmu-miR-5101(1), mmu-miR-452-3p(1), mmu-miR-1904(1), mmu-miR-193b-3p(1), mmu-miR-574-5p(1), mmu-miR-7a-1-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AGTATTTCAAAAGATGACAATGAAAA
siRNA sets
TTTTCATTGTCATCTTTTG, TTTCATTGTCATCTTTTGA, TTGTCATCTTTTGAAATAC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCFAM193A_3164_ORF_1
1.0598
0.233708961
0.999999999
3168
ORF sequence:
ATGACAATGAAAACCAAACAGCGCATGTTAACAGAAGACTGGGAGATTTTTAAACAAAGGAGATTAATTGAAGAACAGTTGACTAATAAGAAAGTGGTTACTGGAGAGAACAACTTCACAGATACCAGGAGGCACATGTTGTCATCTCGGTTGAGCATGCCTGACTGTCCCAACTGCAACTACAGGCGAAGATGTGCTTGTGATGACTGCAGCCTCTCACACATCCTTACTTGTGGTATCATGGACACCCCGGTCACTGATGACATCCACATTCACCAGCTACCACTCCAAGTGGATTCTGCTCCCGACTATCTGTCTGAGATGCGCCCACCTAGTGTGTCATCAGCAAGCTCAGGGTCAGGTTCCAGCTCTCCCATCACAATTCAGCAACATCCTAGACTCATCCTCACAGACAATGGCTCTGCACCAACTTTTTGTAGTGATGATGAAGACGTCGCACCATTGTCAGCTAAGTTTGCTGACATTTATCCGTTGACCAACTACGATGATACCAATGTGGTAGCCAACATGAATGGAATCCACAGCGAACTGAATGGTGGTGGGGAAAACATGGCCCTGAAAGATGAGTCCCCTCAGGTAAGCAGCACCAGCCGTAGTTCTTCAGAGGCTGATGATGAAGATGCTGATGGTGAGAGTAGTGGGGAGCCCCCAGGAGCTCCCAAACAAGAGGAGGCCATAGGAAATGGTAACCCCAAGACAGAAGAGAGTAATGTGAACACTCCACCTCCATCCTACCCAGCTCAGCAGGCAGAACAAACACCGAACACTTGTGAATGCCATGTTTGTAAACAAGAAGCTTCTGGGCTACCAGCATCAGCAATGACTGCTGGAGCCCTGCCTCCTGGCCATCAGTTCCTGAGCCCAGAGAAACCAACACATCCTGCGCTTCACCTGTACCCCCACATCCACGGACATGTACCCTTGCATACTGTTCCACACCTGCCTCGACCGCTCATCCACCCCACCTTGTATCCAGCACCCCCCTTCACACACAGTAAGGCTTTACCGCCAGCACCTGTTCAGAGTCACACAAATAAGCCTCAGGCATTCAATGCATCTCTTCAAGACCATATTTACCCGAGCTGTTTTGGGAACACTCCAGACTGGAATAGTTCTAAATTTATAAGTCTTTGGGAATCAGAAATGATGAATGATAAGAACTGGAACCCTGGCACTTTCTTGCCAGATACAATTTCTGGAAATGATATATTGGGGCCAGTGCTCTCAGAAACAAGACCTGAAGCCCTTCCACCTCCACCCAGCAATGAGGCTCCTGCAGTTTCAGATATCAAAGAAAAGAAAAATGCTGCAAAAAAGAAGTGTTTGTATAATTTCCAAGATGCTTTTATGGAAGCAAATGAAGTTGCCATGGCAAACACAGTTGCCATGGCCACCTCGTCAGCCACATCCTCTGTGTCATGCACAGCCACCACAGTGCAGTCTAGCAGCAGTCAGTTCAAGGTGTCATCCAGAAGACCACCTTCCATAGGTGATGTTTTTCATGGCCTCAACAAAGAGGATCACAGACATTCAGCACCTGCTGCTCCAAGGAACAGCCCCACAGGCCTAGCCCCCCTCCCAGCCTTGTCTCCTTCTGCGCTCTCTCCAGCCTCTACACCTCACCTTCCAAACCTTGCTGCCCCATCATTTCCCAAAACTGCAACCACGGCCCCTGGGTTCGTGGATACACGCAAGAGCTTCTGTCCTACCCCTGTGGCACCCCCGCCCTCCACAACAGATGGCTCCATAAGTGCCCCTCCCAGTGTCTGCAGTGACCCTGACTGTGAAGGGCACCGCTGCGAGAATGGGGTCTATGACCCGCAGCAGGATGATGGGGATGAGAGTGCAGATGAGGACAGCTGCTCCGAGCACAGCTCCAGCACCTCAACTTCCACCAACCAGAAGGAGGGCAAGTACTGTGACTGCTGCTACTGTGAGTTCTTTGGACATGGCGGGCCTCCAGCTGCACCAACAAGTAGAAATTATGCAGAAATGAGGGAAAAACTTCGTTTACGCCTGACTAAGAGGAAGGAAGAACAACCCAAGAAAATGGAGCAGATCTCAGAACGGGAGGGTGTGGTTGACCATCGGAGAGTGGAGGATTTGTTACAGTTTATAAACAGCTCTGAGGCCAAGCCAGTTAGTAGTAGTCGGGCAGCCAAACGAGCAAGGCACAAGCAGAGGAAGCTGGAAGAGAAGGCACGCCTAGAAGCTGAGGCCAGGGCACGGGAGCATCTGCATCATCAGGAGGAGCAAAAGCAGCGGGAAGAAGAGGAGGACGAAGAAGAGGAGGACGAGGAACAGCATTTCAAGGAGGAATTTCAGCGGCTTCAGGAGCTTCAGAAGTTAAGAGCTGCAAAAAAGAAGAAAAAGGATCGGCCAAGTAAAGACTGTTCCAAGTTGGACATGCTTGCTAGAAATTTCCAGGCAGCAACAGAGTCTATCTCTAACTCTGAAAACATCCACAATGGCTCCTTAGAACAAACCGAAGAACCAGAAACCTCATCTCACTCCCCTTCCAGACACATGAACCACTCAGAGCCCAGGCCAGGGCCTGGAGCCAATGGGGATGCTACAGACCCTGTGGACCCCAGAGACCCCTCCAAGCTTCTGCTACCTAAGGAAGTCAATGGGAAGCAGCACGAGCCTCTTGCATTTCTCTTGGACATGATGCATCATCACAAGGAGGGAAATAGCAAGCAAAAGTTAAAGCAAACCAGCAAGACCAGCAATGAGCCAGCCAGGAAGCCCACAGAGCCTCCCAAAACCACAGAGGTACAGCTCAAACCCCGGGCCCAGCCAGAGTTGAAACCTAAAGTAGTTGACCTTGCTCTTCTCACAGAGCAGAAGAGGGAGGAGAGGAAAACCAACAGCAACAACAACAACAAAAAGCAGCTGAGCCACATCAAAGAGGAGAAGCTGAGCACTGTCACTCCTGAGCCACCCTCCCCCAGCCAGCTCCTGCAGAATGGCAGGCTGATTCTGGCCAGTTCTCCTCAGCCCAAGGGCAAGAATAAGAAAAATAAAAAGAAGAAAGGAGACAGAACCAGCAGTTCACTTGATGATGTTTTTCTGCCTAAAGACATCGACCTGGACAGTGTGGATATGGATGAGACTGAGCGGGAGGTGGAGTATTTCAAAAGATGA
Peptide sequence:
MTMKTKQRMLTEDWEIFKQRRLIEEQLTNKKVVTGENNFTDTRRHMLSSRLSMPDCPNCNYRRRCACDDCSLSHILTCGIMDTPVTDDIHIHQLPLQVDSAPDYLSEMRPPSVSSASSGSGSSSPITIQQHPRLILTDNGSAPTFCSDDEDVAPLSAKFADIYPLTNYDDTNVVANMNGIHSELNGGGENMALKDESPQVSSTSRSSSEADDEDADGESSGEPPGAPKQEEAIGNGNPKTEESNVNTPPPSYPAQQAEQTPNTCECHVCKQEASGLPASAMTAGALPPGHQFLSPEKPTHPALHLYPHIHGHVPLHTVPHLPRPLIHPTLYPAPPFTHSKALPPAPVQSHTNKPQAFNASLQDHIYPSCFGNTPDWNSSKFISLWESEMMNDKNWNPGTFLPDTISGNDILGPVLSETRPEALPPPPSNEAPAVSDIKEKKNAAKKKCLYNFQDAFMEANEVAMANTVAMATSSATSSVSCTATTVQSSSSQFKVSSRRPPSIGDVFHGLNKEDHRHSAPAAPRNSPTGLAPLPALSPSALSPASTPHLPNLAAPSFPKTATTAPGFVDTRKSFCPTPVAPPPSTTDGSISAPPSVCSDPDCEGHRCENGVYDPQQDDGDESADEDSCSEHSSSTSTSTNQKEGKYCDCCYCEFFGHGGPPAAPTSRNYAEMREKLRLRLTKRKEEQPKKMEQISEREGVVDHRRVEDLLQFINSSEAKPVSSSRAAKRARHKQRKLEEKARLEAEARAREHLHHQEEQKQREEEEDEEEEDEEQHFKEEFQRLQELQKLRAAKKKKKDRPSKDCSKLDMLARNFQAATESISNSENIHNGSLEQTEEPETSSHSPSRHMNHSEPRPGPGANGDATDPVDPRDPSKLLLPKEVNGKQHEPLAFLLDMMHHHKEGNSKQKLKQTSKTSNEPARKPTEPPKTTEVQLKPRAQPELKPKVVDLALLTEQKREERKTNSNNNNKKQLSHIKEEKLSTVTPEPPSPSQLLQNGRLILASSPQPKGKNKKNKKKKGDRTSSSLDDVFLPKDIDLDSVDMDETEREVEYFKR
IRESfinder result
IRESfinder score
0.497297075
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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