top of page

mmu_circEzh1_496

Basic information of circular RNA
PanCircBase ID:

mmu_circEzh1_496

mm39_Chr. Position ID:

chr11|101104549|101108194|-

Gene name:

Ezh1

Transcript:

ENSMUST00000100417.3

CircRNA type:

Exonic circular (circ)RNA

Exon/Intron count:

4

Exon/intron indexes:

6,5,4,3

Exon/intron offsets:

0,1459,3271,3519

Genomic length:

3645

Exon/intron sizes in nt:

1,21,12,01,29,126

Flanking exon/introns:

chr11:101101549-101104549|chr11:101108194-101109479

Splice length:

496

Other database IDs:

Human Ortholog IDs:
Mature spliced Sequence:

TCCAGGAAAATGGATATAGCAAGTCCCCCAACTTCCAAATGCATCACATACTGGAAAAGAAAAGTGAAATCTGAGTATATGCGGCTTCGACAGCTCAAACGGCTCCAGGCAAATATGGGAGCAAAGGCTCTGTATGTGGCAAATTTTGCAAAGGTTCAAGAAAAAACCCAAATCCTCAATGAAGAGTGGAAGAAACTTCGTGTCCAGCCTGTTCAGCCAATGAAGCCCGTGAGTGGGCACCCTTTTCTGAAAAAGTGTACCATAGAGAGCATTTTCCCAGGGTTCGACAGCCAGGATATGTTGATGCGGTCTCTGAACACTGTTGCACTGGTTCCCATCATGTATTCCTGGTCCCCTCTCCAGCAGAATTTCATGGTGGAAGATGAGACGGTTTTGTGCAATATTCCATACATGGGTGACGAGGTGAAGGAAGAAGATGAGACTTTCATCGAAGAGCTGATCAATAACTATGATGGCAAAGTCCACGGTGAAGAAG

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

GGGTGACGAGGTGAAGGAAG

60.04

TGTCGAAGCCGCATATACTCA

59.32

175

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

ACATGGGTGACGAGGTGAAG

59.68

TGTCGAAGCCGCATATACTCA

59.32

179

PCR template sequence:

TGCAATATTCCATACATGGGTGACGAGGTGAAGGAAGAAGATGAGACTTTCATCGAAGAGCTGATCAATAACTATGATGGCAAAGTCCACGGTGAAGAAGTCCAGGAAAATGGATATAGCAAGTCCCCCAACTTCCAAATGCATCACATACTGGAAAAGAAAAGTGAAATCTGAGTATATGCGGCTTCGACAGCTCAAAC

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

9

Interacting miRNAs (#binding sites)

mmu-miR-32-5p(1), mmu-miR-130a-3p(1), mmu-miR-25-3p(1), mmu-miR-363-3p(1), mmu-miR-130b-3p(1), mmu-miR-301b-3p(1), mmu-miR-297a-5p(1), mmu-miR-301a-3p(1), mmu-miR-325-3p(1)

siRNAs for circular RNA silencing
Junction sequence

CACGGTGAAGAAGTCCAGGAAAATGG

siRNA sets

TTTTCCTGGACTTCTTCAC, TTTCCTGGACTTCTTCACC, ATTTTCCTGGACTTCTTCA

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

CIRCEZH1_496_ORF_1

1.2027

0.262571811

0.890143305

561

ORF sequence:

ATGGATATAGCAAGTCCCCCAACTTCCAAATGCATCACATACTGGAAAAGAAAAGTGAAATCTGAGTATATGCGGCTTCGACAGCTCAAACGGCTCCAGGCAAATATGGGAGCAAAGGCTCTGTATGTGGCAAATTTTGCAAAGGTTCAAGAAAAAACCCAAATCCTCAATGAAGAGTGGAAGAAACTTCGTGTCCAGCCTGTTCAGCCAATGAAGCCCGTGAGTGGGCACCCTTTTCTGAAAAAGTGTACCATAGAGAGCATTTTCCCAGGGTTCGACAGCCAGGATATGTTGATGCGGTCTCTGAACACTGTTGCACTGGTTCCCATCATGTATTCCTGGTCCCCTCTCCAGCAGAATTTCATGGTGGAAGATGAGACGGTTTTGTGCAATATTCCATACATGGGTGACGAGGTGAAGGAAGAAGATGAGACTTTCATCGAAGAGCTGATCAATAACTATGATGGCAAAGTCCACGGTGAAGAAGTCCAGGAAAATGGATATAGCAAGTCCCCCAACTTCCAAATGCATCACATACTGGAAAAGAAAAGTGAAATCTGA

Peptide sequence:

MDIASPPTSKCITYWKRKVKSEYMRLRQLKRLQANMGAKALYVANFAKVQEKTQILNEEWKKLRVQPVQPMKPVSGHPFLKKCTIESIFPGFDSQDMLMRSLNTVALVPIMYSWSPLQQNFMVEDETVLCNIPYMGDEVKEEDETFIEELINNYDGKVHGEEVQENGYSKSPNFQMHHILEKKSEI

IRESfinder result

IRESfinder score

0.387468967

IRES/non IRES

non-IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

logo.png

Institute of Life sciences, Bhubaneswar, India

bottom of page