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mmu_circExoc6_1994
Basic information of circular RNA
PanCircBase ID:
mmu_circExoc6_1994
mm39_Chr. Position ID:
chr19|37558830|37628211|+
Gene name:
Exoc6
Transcript:
ENSMUST00000238954.2
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
18
Exon/intron indexes:
3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20
Exon/intron offsets:
0,1210,1475,3329,6553,8037,11810,15428,17255,17434,19468,20485,23279,26712,28183,29176,38543,69239
Genomic length:
69381
Exon/intron sizes in nt:
1,72,48,91,46,20,51,56,00,00,00,00,00,00,00,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr19:37525347-37558830|chr19:37628211-37641830
Splice length:
1994
Other database IDs:
circBase: mmu_circ_0007754, CIRCpedia: MMU_CIRCpedia_18618, circAtlas: mmu-Exoc6_0004
circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_143454
Human Ortholog IDs:
Mature spliced Sequence:
ATCTGTGTATGATGATCAGCCAAACGCACACAAGAAGTTTATGGAAAAGCTAGACGCTTGTATCCGCAATCATGACAAGGAAATTGAAAAAATGTGTAACTTCCATCACCAGGGCTTTGTGGATGCGATTACGGAACTCCTCAAAGTAAGGGCCGATGCGGAAAAACTGAAGGTGCAGGTTACCGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGAGGTGATAATCCAAACAGAAGATATTATTCGGTGTAGGATTCAGCAGAGAAATATTACAACCGTAGTAGAGAAATTACAGTTATGCCTCCCAGTGTTGGAGATGTACAGTAAGCTGAAGGAACAGATGAGCATGAAAAGGTATTACTCCGCACTTAAAACAATGGAACAGCTAGAGAATGTGTACTTTCCCCGGGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCCTAAACTCCGGGAAGACATCAAAGACATCTCCATGTCTGATCTCAAGGACTTTCTGGAAAGCATCCGAAAGCATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAGGCACAACAGCAGAAGAGCTTCAGTGTTGCTCTGCAGAAGCAAAATAATATGAGGTTTGGGAAAAACATGCATGTAAATAATGACAGGATTCTAGAAGAGAAGAGTGATGTTATACCGAAGCATGCACTTGAAGAGGAGGCGGAGAACGACGAGGAGGTCTTAACTGTTCAAGATCTCGTTGATTTTTCCCCTGTTTACCGATGCTTGCACATTTATTCTGCTTTGGGTGATGAAGAAACATTTGAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTTCTGCAGCCGCAGTCGAGTGTGCATGAAACAGTTGATGGCTATAGAAGATATTTCACTCAAATTGTAGGGTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGATTAGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCCTCAGAGCTCACTCATCTTACTGCACTGACCCTGACCTTGTTCTGGAGCTGAAGAATCTCATCGTAATTTTTGCAGACACTCTGCAGGGTTATGGCTTCCCAGTCAACCGGCTCTTTGACCTTTTATTCGAAATAAGAGATCAATATAACGAAACACTGCTGAAGAAGTGGGCTGGTATTTTCAGGGACATTTTTGAAGAAGATAATTACAGCCCCATCCCTATTGGCAGTGAGGAAGAATATAAAGTAGTCATCAGTAGATTCCCGTTTCAGGATCCAGACCTCGAAAAGCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAGCTCAACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAGCTGGTGCAAATTATCATAAACACAACACACCTGGAACAAGCTTGCAAATACCTAGAGGACTTTATAACTAACATTACAAATATTTCTCAAGAAACCGTTCACACCACAAGACTTTATGGACTTTCTACTTTTAAGGATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAAATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGGAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCTGGGAAAGTTGCCCAGACAGCTTGCATGTCAGCCTGCCAACATCTGTCCACATCCTTAATGCAGATGCTACTGGACAGTGAGTTAAAGCAGATCAGCATGGGAGCCGTGCAGCAGTTTAACCTCGATGTCATACAGTGCGAAC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGCAGATGCTACTGGACAGTG
60.07
TGATTGCGGATACAAGCGTCT
60.13
156
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCAGATGCTACTGGACAGTGA
59.79
TGATTGCGGATACAAGCGTCT
60.13
155
PCR template sequence:
CTGTCCACATCCTTAATGCAGATGCTACTGGACAGTGAGTTAAAGCAGATCAGCATGGGAGCCGTGCAGCAGTTTAACCTCGATGTCATACAGTGCGAACATCTGTGTATGATGATCAGCCAAACGCACACAAGAAGTTTATGGAAAAGCTAGACGCTTGTATCCGCAATCATGACAAGGAAATTGAAAAAATGTGTAAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
21
Interacting miRNAs (#binding sites)
mmu-miR-210-3p(1), mmu-miR-15a-5p(1), mmu-miR-141-3p(1), mmu-miR-30e-5p(1), mmu-miR-122-5p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-148a-3p(1), mmu-miR-30c-5p(1), mmu-miR-381-3p(1), mmu-miR-30b-5p(1), mmu-miR-467b-5p(1), mmu-miR-362-5p(1), mmu-miR-383-5p(1), mmu-miR-499-5p(1), mmu-miR-539-5p(1), mmu-miR-335-3p(1), mmu-miR-669d-5p(1), mmu-miR-3087-3p(1), mmu-miR-670-5p(1), mmu-miR-7a-1-3p(1)
siRNAs for circular RNA silencing
Junction sequence
ATACAGTGCGAACATCTGTGTATGAT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCEXOC6_1994_ORF_1
1.0869
0.139277966
0.999992012
2007
ORF sequence:
ATGGAAAAGCTAGACGCTTGTATCCGCAATCATGACAAGGAAATTGAAAAAATGTGTAACTTCCATCACCAGGGCTTTGTGGATGCGATTACGGAACTCCTCAAAGTAAGGGCCGATGCGGAAAAACTGAAGGTGCAGGTTACCGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGAGGTGATAATCCAAACAGAAGATATTATTCGGTGTAGGATTCAGCAGAGAAATATTACAACCGTAGTAGAGAAATTACAGTTATGCCTCCCAGTGTTGGAGATGTACAGTAAGCTGAAGGAACAGATGAGCATGAAAAGGTATTACTCCGCACTTAAAACAATGGAACAGCTAGAGAATGTGTACTTTCCCCGGGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCCTAAACTCCGGGAAGACATCAAAGACATCTCCATGTCTGATCTCAAGGACTTTCTGGAAAGCATCCGAAAGCATTCTGACAAAATAGGTGAAGCAGCCATGAAGCAGGCACAACAGCAGAAGAGCTTCAGTGTTGCTCTGCAGAAGCAAAATAATATGAGGTTTGGGAAAAACATGCATGTAAATAATGACAGGATTCTAGAAGAGAAGAGTGATGTTATACCGAAGCATGCACTTGAAGAGGAGGCGGAGAACGACGAGGAGGTCTTAACTGTTCAAGATCTCGTTGATTTTTCCCCTGTTTACCGATGCTTGCACATTTATTCTGCTTTGGGTGATGAAGAAACATTTGAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTTCTGCAGCCGCAGTCGAGTGTGCATGAAACAGTTGATGGCTATAGAAGATATTTCACTCAAATTGTAGGGTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGATTAGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCCTCAGAGCTCACTCATCTTACTGCACTGACCCTGACCTTGTTCTGGAGCTGAAGAATCTCATCGTAATTTTTGCAGACACTCTGCAGGGTTATGGCTTCCCAGTCAACCGGCTCTTTGACCTTTTATTCGAAATAAGAGATCAATATAACGAAACACTGCTGAAGAAGTGGGCTGGTATTTTCAGGGACATTTTTGAAGAAGATAATTACAGCCCCATCCCTATTGGCAGTGAGGAAGAATATAAAGTAGTCATCAGTAGATTCCCGTTTCAGGATCCAGACCTCGAAAAGCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAGCTCAACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAGCTGGTGCAAATTATCATAAACACAACACACCTGGAACAAGCTTGCAAATACCTAGAGGACTTTATAACTAACATTACAAATATTTCTCAAGAAACCGTTCACACCACAAGACTTTATGGACTTTCTACTTTTAAGGATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAAATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGGAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCTGGGAAAGTTGCCCAGACAGCTTGCATGTCAGCCTGCCAACATCTGTCCACATCCTTAATGCAGATGCTACTGGACAGTGAGTTAAAGCAGATCAGCATGGGAGCCGTGCAGCAGTTTAACCTCGATGTCATACAGTGCGAACATCTGTGTATGATGATCAGCCAAACGCACACAAGAAGTTTATGGAAAAGCTAG
Peptide sequence:
MEKLDACIRNHDKEIEKMCNFHHQGFVDAITELLKVRADAEKLKVQVTDTNRRFQDAGKEVIIQTEDIIRCRIQQRNITTVVEKLQLCLPVLEMYSKLKEQMSMKRYYSALKTMEQLENVYFPRVSQYRFCQLMMETLPKLREDIKDISMSDLKDFLESIRKHSDKIGEAAMKQAQQQKSFSVALQKQNNMRFGKNMHVNNDRILEEKSDVIPKHALEEEAENDEEVLTVQDLVDFSPVYRCLHIYSALGDEETFENYYRKQRKKQARLVLQPQSSVHETVDGYRRYFTQIVGFFVVEDHILHVTQGLVTRVYTEELWNMALSKIIAVLRAHSSYCTDPDLVLELKNLIVIFADTLQGYGFPVNRLFDLLFEIRDQYNETLLKKWAGIFRDIFEEDNYSPIPIGSEEEYKVVISRFPFQDPDLEKQSFPKKFPMSQSVPLIYIQVKEFIYASLKFSESLHRSSTEIDDMLRKSTNLLLTRILSSCLLNLIRKPHIGLTELVQIIINTTHLEQACKYLEDFITNITNISQETVHTTRLYGLSTFKDARHAAEGEIYTKLNQKIDEFVQLADYDWTMAESDGRASGYLMDLINFLRSIFQVFTHLPGKVAQTACMSACQHLSTSLMQMLLDSELKQISMGAVQQFNLDVIQCEHLCMMISQTHTRSLWKS
IRESfinder result
IRESfinder score
0.5836154
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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