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mmu_circExoc6_1134
Basic information of circular RNA
PanCircBase ID:
mmu_circExoc6_1134
mm39_Chr. Position ID:
chr19|37570640|37597553|+
Gene name:
Exoc6
Transcript:
ENSMUST00000238954.2
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
11
Exon/intron indexes:
9,10,11,12,13,14,15,16,17,18,19
Exon/intron offsets:
0,3618,5445,5624,7658,8675,11469,14902,16373,17366,26733
Genomic length:
26913
Exon/intron sizes in nt:
6,98,44,71,21,72,98,10,00,00,00,00,00,000
Flanking exon/introns:
chr19:37567023-37570640|chr19:37597553-37628069
Splice length:
1134
Other database IDs:
CIRCpedia: MMU_CIRCpedia_36934, circAtlas: mmu-Exoc6_0012
circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_115299
Human Ortholog IDs:
Mature spliced Sequence:
GTCTTAACTGTTCAAGATCTCGTTGATTTTTCCCCTGTTTACCGATGCTTGCACATTTATTCTGCTTTGGGTGATGAAGAAACATTTGAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTTCTGCAGCCGCAGTCGAGTGTGCATGAAACAGTTGATGGCTATAGAAGATATTTCACTCAAATTGTAGGGTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGATTAGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCCTCAGAGCTCACTCATCTTACTGCACTGACCCTGACCTTGTTCTGGAGCTGAAGAATCTCATCGTAATTTTTGCAGACACTCTGCAGGGTTATGGCTTCCCAGTCAACCGGCTCTTTGACCTTTTATTCGAAATAAGAGATCAATATAACGAAACACTGCTGAAGAAGTGGGCTGGTATTTTCAGGGACATTTTTGAAGAAGATAATTACAGCCCCATCCCTATTGGCAGTGAGGAAGAATATAAAGTAGTCATCAGTAGATTCCCGTTTCAGGATCCAGACCTCGAAAAGCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAGCTCAACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAGCTGGTGCAAATTATCATAAACACAACACACCTGGAACAAGCTTGCAAATACCTAGAGGACTTTATAACTAACATTACAAATATTTCTCAAGAAACCGTTCACACCACAAGACTTTATGGACTTTCTACTTTTAAGGATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAAATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGGAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGCTGAGTCAGATGGGAGA
59.96
GCAAGCATCGGTAAACAGGG
59.55
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CTGGACCATGGCTGAGTCAG
60.11
GCAAGCATCGGTAAACAGGG
59.55
149
PCR template sequence:
TGACTGGACCATGGCTGAGTCAGATGGGAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCTGTCTTAACTGTTCAAGATCTCGTTGATTTTTCCCCTGTTTACCGATGCTTGCACATTTATTCTGCTTTGGGTGATGAAGAAACATTTGAAAATTATTACC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
12
Interacting miRNAs (#binding sites)
mmu-miR-15a-5p(1), mmu-miR-30e-5p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-148a-3p(1), mmu-miR-30c-5p(1), mmu-miR-30b-5p(1), mmu-miR-362-5p(1), mmu-miR-499-5p(1), mmu-miR-539-5p(1), mmu-miR-670-5p(1), mmu-miR-7a-1-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TACCCATTTGCCTGTCTTAACTGTTC
siRNA sets
GTTAAGACAGGCAAATGGG, AGTTAAGACAGGCAAATGG, TAAGACAGGCAAATGGGTA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCEXOC6_1134_ORF_1
0.9676
0.044544329
0.999983932
1989
ORF sequence:
ATGGCCCTCTCAAAGATAATTGCTGTCCTCAGAGCTCACTCATCTTACTGCACTGACCCTGACCTTGTTCTGGAGCTGAAGAATCTCATCGTAATTTTTGCAGACACTCTGCAGGGTTATGGCTTCCCAGTCAACCGGCTCTTTGACCTTTTATTCGAAATAAGAGATCAATATAACGAAACACTGCTGAAGAAGTGGGCTGGTATTTTCAGGGACATTTTTGAAGAAGATAATTACAGCCCCATCCCTATTGGCAGTGAGGAAGAATATAAAGTAGTCATCAGTAGATTCCCGTTTCAGGATCCAGACCTCGAAAAGCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAGCTCAACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAGCTGGTGCAAATTATCATAAACACAACACACCTGGAACAAGCTTGCAAATACCTAGAGGACTTTATAACTAACATTACAAATATTTCTCAAGAAACCGTTCACACCACAAGACTTTATGGACTTTCTACTTTTAAGGATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAAATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGGAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCTGTCTTAACTGTTCAAGATCTCGTTGATTTTTCCCCTGTTTACCGATGCTTGCACATTTATTCTGCTTTGGGTGATGAAGAAACATTTGAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTTCTGCAGCCGCAGTCGAGTGTGCATGAAACAGTTGATGGCTATAGAAGATATTTCACTCAAATTGTAGGGTTCTTTGTTGTGGAAGATCACATTTTACACGTGACCCAAGGATTAGTAACCAGGGTCTACACTGAGGAACTCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCCTCAGAGCTCACTCATCTTACTGCACTGACCCTGACCTTGTTCTGGAGCTGAAGAATCTCATCGTAATTTTTGCAGACACTCTGCAGGGTTATGGCTTCCCAGTCAACCGGCTCTTTGACCTTTTATTCGAAATAAGAGATCAATATAACGAAACACTGCTGAAGAAGTGGGCTGGTATTTTCAGGGACATTTTTGAAGAAGATAATTACAGCCCCATCCCTATTGGCAGTGAGGAAGAATATAAAGTAGTCATCAGTAGATTCCCGTTTCAGGATCCAGACCTCGAAAAGCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATTTATATTCAAGTTAAAGAATTTATTTATGCCAGTCTTAAATTTTCAGAGTCGCTACACCGAAGCTCAACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTATTAGAAAACCTCATATAGGTTTGACAGAGCTGGTGCAAATTATCATAAACACAACACACCTGGAACAAGCTTGCAAATACCTAGAGGACTTTATAACTAACATTACAAATATTTCTCAAGAAACCGTTCACACCACAAGACTTTATGGACTTTCTACTTTTAAGGATGCTCGACATGCGGCAGAAGGAGAAATATATACCAAACTCAATCAAAAAATTGATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGGAGAGCAAGTGGTTATTTAATGGATCTTATTAATTTTCTGAGAAGCATCTTTCAAGTGTTTACCCATTTGCCT
Peptide sequence:
MALSKIIAVLRAHSSYCTDPDLVLELKNLIVIFADTLQGYGFPVNRLFDLLFEIRDQYNETLLKKWAGIFRDIFEEDNYSPIPIGSEEEYKVVISRFPFQDPDLEKQSFPKKFPMSQSVPLIYIQVKEFIYASLKFSESLHRSSTEIDDMLRKSTNLLLTRILSSCLLNLIRKPHIGLTELVQIIINTTHLEQACKYLEDFITNITNISQETVHTTRLYGLSTFKDARHAAEGEIYTKLNQKIDEFVQLADYDWTMAESDGRASGYLMDLINFLRSIFQVFTHLPVLTVQDLVDFSPVYRCLHIYSALGDEETFENYYRKQRKKQARLVLQPQSSVHETVDGYRRYFTQIVGFFVVEDHILHVTQGLVTRVYTEELWNMALSKIIAVLRAHSSYCTDPDLVLELKNLIVIFADTLQGYGFPVNRLFDLLFEIRDQYNETLLKKWAGIFRDIFEEDNYSPIPIGSEEEYKVVISRFPFQDPDLEKQSFPKKFPMSQSVPLIYIQVKEFIYASLKFSESLHRSSTEIDDMLRKSTNLLLTRILSSCLLNLIRKPHIGLTELVQIIINTTHLEQACKYLEDFITNITNISQETVHTTRLYGLSTFKDARHAAEGEIYTKLNQKIDEFVQLADYDWTMAESDGRASGYLMDLINFLRSIFQVFTHLP
IRESfinder result
IRESfinder score
0.772447176
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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