top of page
mmu_circExoc4_1266
Basic information of circular RNA
PanCircBase ID:
mmu_circExoc4_1266
mm39_Chr. Position ID:
chr6|33273667|33735121|+
Gene name:
Exoc4
Transcript:
ENSMUST00000052266.15
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
8
Exon/intron indexes:
4,5,6,7,8,9,10,11
Exon/intron offsets:
0,8552,35478,51050,141647,145218,283249,461234
Genomic length:
461454
Exon/intron sizes in nt:
1,85,11,02,44,17,51,46,00,00,000
Flanking exon/introns:
chr6:33254316-33273667|chr6:33735121-33792608
Splice length:
1266
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGTCAGCAGTGGAGTCCCTGGAGGGTCCACTGCTCCAGGTGGAAGGGCTCAGTGATCTCAGGCTGGAACTTCACAGCAAGAAGATGAACCTGCACTTGGTTCTCATAGAGGAACTGCACCGCCATCTGTATATCAAATCCACTAGCCGGGTGGTACAGCGTAACAAGGAAAAGGGGAAGATGAGTTCTCATGGCAAAGATCCCTCTCCTGGTCCTCTGATTGATGTTTCAAACATCCCTACTCCACGCAAATTCCTTGATGCTTCTCAATATTCTGCTGCTGGAGGCTCAAGTGTGAGGGAGATGAACCTGCAAGACGTCAAGGAGGACTTGGAGTGTGACCCAGAGGAGAACAGCACTCTTTTCATGGGAATTCTTATTCAGGGCCTGGCCAGACTGAAGAAGATCCCTGAGACAGTTAAAGCCATTAAAGAGCGTCTGGAGCAGGAGCTAAAGCAGATTGTGAAGAGGTCAACCACCCAGGTAGCAGACAGTGCTTATCAGAGGGGAGAGAGCCTCACTGTGGACAATCAGCCAAGGTTACTCCTAGAACTGCTGGAACTGTTGTTTGATAAGTTTAATGCCGTAGCCACTGCACACTCAGTGGTCCTGGGGTACCTCCAGGACTCTGTTGGGACCCAGCTAACACAGCAGGAGGAGATCAAATTATATGACATGGCAGATGTGTGGGTGAAGATCCAGGATGTGCTGCAGATGCTGTTGACTGAGTACTTGGATATGAAGAACACACGCACCGCCTCAGAGCCATCAGCCCAACTAAGCTATGCCAGTACTGGACGAGAGTTCGCAGCCTTTTTTGCCAAGAAGAAACCACAGAGGCCAAAGAATTCTCTTTTCAAGTTTGAATCATCCTCCCATGCTATCAGCATGAGCGCCTATCTCCGAGAACAAAGAAGGGAGCTCTACAGTCGGAGTGGAGAACTCCAGGGAGGTCCTGATGACAACTTAATTGAAGGTGGAGGAACAAAATTTGTCTGCAAACCTGGAGCCAGAAATATTACCGTCATATTCCATCCATTACTGAGATTTATTCAGGAGATTGAACATGCCCTGGGACTTGGCCCTGCCAAACAGTGTCCTCTTCGAGAGTTTCTTACCGTGTATATCAAGAGCATCTTCCTTAATCAGGTCTTGGCTGAGATCAACAAGGAGATTGAAGGCGTCACCAAAACCTCAGACCCCTTGAAGATCCTGGCTAATGCAGACACCATGAAGGTTCTGGGAGTGCAGCGGCCTCTTCTACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGAGATTGAAGGCGTCACCA
60.04
GATCACTGAGCCCTTCCACC
60.11
155
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAGGCGTCACCAAAACCTCA
60.11
GATCACTGAGCCCTTCCACC
60.11
147
PCR template sequence:
CAAGGAGATTGAAGGCGTCACCAAAACCTCAGACCCCTTGAAGATCCTGGCTAATGCAGACACCATGAAGGTTCTGGGAGTGCAGCGGCCTCTTCTACAGGTGTCAGCAGTGGAGTCCCTGGAGGGTCCACTGCTCCAGGTGGAAGGGCTCAGTGATCTCAGGCTGGAACTTCACAGCAAGAAGATGAACCTGCACTTGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
13
Interacting miRNAs (#binding sites)
mmu-miR-16-5p(1), mmu-miR-15a-5p(1), mmu-miR-15b-5p(1), mmu-miR-146a-5p(1), mmu-miR-326-3p(1), mmu-miR-128-3p(1), mmu-miR-149-5p(1), mmu-miR-431-5p(1), mmu-miR-494-3p(1), mmu-miR-370-3p(1), mmu-miR-541-5p(1), mmu-miR-697(1), mmu-miR-146b-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GCCTCTTCTACAGGTGTCAGCAGTGG
siRNA sets
CTGACACCTGTAGAAGAGG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCEXOC4_1266_ORF_1
1.2326
0.296978038
0.999999872
2448
ORF sequence:
ATGAACCTGCACTTGGTTCTCATAGAGGAACTGCACCGCCATCTGTATATCAAATCCACTAGCCGGGTGGTACAGCGTAACAAGGAAAAGGGGAAGATGAGTTCTCATGGCAAAGATCCCTCTCCTGGTCCTCTGATTGATGTTTCAAACATCCCTACTCCACGCAAATTCCTTGATGCTTCTCAATATTCTGCTGCTGGAGGCTCAAGTGTGAGGGAGATGAACCTGCAAGACGTCAAGGAGGACTTGGAGTGTGACCCAGAGGAGAACAGCACTCTTTTCATGGGAATTCTTATTCAGGGCCTGGCCAGACTGAAGAAGATCCCTGAGACAGTTAAAGCCATTAAAGAGCGTCTGGAGCAGGAGCTAAAGCAGATTGTGAAGAGGTCAACCACCCAGGTAGCAGACAGTGCTTATCAGAGGGGAGAGAGCCTCACTGTGGACAATCAGCCAAGGTTACTCCTAGAACTGCTGGAACTGTTGTTTGATAAGTTTAATGCCGTAGCCACTGCACACTCAGTGGTCCTGGGGTACCTCCAGGACTCTGTTGGGACCCAGCTAACACAGCAGGAGGAGATCAAATTATATGACATGGCAGATGTGTGGGTGAAGATCCAGGATGTGCTGCAGATGCTGTTGACTGAGTACTTGGATATGAAGAACACACGCACCGCCTCAGAGCCATCAGCCCAACTAAGCTATGCCAGTACTGGACGAGAGTTCGCAGCCTTTTTTGCCAAGAAGAAACCACAGAGGCCAAAGAATTCTCTTTTCAAGTTTGAATCATCCTCCCATGCTATCAGCATGAGCGCCTATCTCCGAGAACAAAGAAGGGAGCTCTACAGTCGGAGTGGAGAACTCCAGGGAGGTCCTGATGACAACTTAATTGAAGGTGGAGGAACAAAATTTGTCTGCAAACCTGGAGCCAGAAATATTACCGTCATATTCCATCCATTACTGAGATTTATTCAGGAGATTGAACATGCCCTGGGACTTGGCCCTGCCAAACAGTGTCCTCTTCGAGAGTTTCTTACCGTGTATATCAAGAGCATCTTCCTTAATCAGGTCTTGGCTGAGATCAACAAGGAGATTGAAGGCGTCACCAAAACCTCAGACCCCTTGAAGATCCTGGCTAATGCAGACACCATGAAGGTTCTGGGAGTGCAGCGGCCTCTTCTACAGGTGTCAGCAGTGGAGTCCCTGGAGGGTCCACTGCTCCAGGTGGAAGGGCTCAGTGATCTCAGGCTGGAACTTCACAGCAAGAAGATGAACCTGCACTTGGTTCTCATAGAGGAACTGCACCGCCATCTGTATATCAAATCCACTAGCCGGGTGGTACAGCGTAACAAGGAAAAGGGGAAGATGAGTTCTCATGGCAAAGATCCCTCTCCTGGTCCTCTGATTGATGTTTCAAACATCCCTACTCCACGCAAATTCCTTGATGCTTCTCAATATTCTGCTGCTGGAGGCTCAAGTGTGAGGGAGATGAACCTGCAAGACGTCAAGGAGGACTTGGAGTGTGACCCAGAGGAGAACAGCACTCTTTTCATGGGAATTCTTATTCAGGGCCTGGCCAGACTGAAGAAGATCCCTGAGACAGTTAAAGCCATTAAAGAGCGTCTGGAGCAGGAGCTAAAGCAGATTGTGAAGAGGTCAACCACCCAGGTAGCAGACAGTGCTTATCAGAGGGGAGAGAGCCTCACTGTGGACAATCAGCCAAGGTTACTCCTAGAACTGCTGGAACTGTTGTTTGATAAGTTTAATGCCGTAGCCACTGCACACTCAGTGGTCCTGGGGTACCTCCAGGACTCTGTTGGGACCCAGCTAACACAGCAGGAGGAGATCAAATTATATGACATGGCAGATGTGTGGGTGAAGATCCAGGATGTGCTGCAGATGCTGTTGACTGAGTACTTGGATATGAAGAACACACGCACCGCCTCAGAGCCATCAGCCCAACTAAGCTATGCCAGTACTGGACGAGAGTTCGCAGCCTTTTTTGCCAAGAAGAAACCACAGAGGCCAAAGAATTCTCTTTTCAAGTTTGAATCATCCTCCCATGCTATCAGCATGAGCGCCTATCTCCGAGAACAAAGAAGGGAGCTCTACAGTCGGAGTGGAGAACTCCAGGGAGGTCCTGATGACAACTTAATTGAAGGTGGAGGAACAAAATTTGTCTGCAAACCTGGAGCCAGAAATATTACCGTCATATTCCATCCATTACTGAGATTTATTCAGGAGATTGAACATGCCCTGGGACTTGGCCCTGCCAAACAGTGTCCTCTTCGAGAGTTTCTTACCGTGTATATCAAGAGCATCTTCCTTAATCAGGTCTTGGCTGAGATCAACAAGGAGATTGAAGGCGTCACCAAAACCTCAGACCCCTTGAAGATCCTGGCTAATGCAGACACCATGAAGGTTCTGGGAGTGCAGCGGCCTCTTCTACAG
Peptide sequence:
MNLHLVLIEELHRHLYIKSTSRVVQRNKEKGKMSSHGKDPSPGPLIDVSNIPTPRKFLDASQYSAAGGSSVREMNLQDVKEDLECDPEENSTLFMGILIQGLARLKKIPETVKAIKERLEQELKQIVKRSTTQVADSAYQRGESLTVDNQPRLLLELLELLFDKFNAVATAHSVVLGYLQDSVGTQLTQQEEIKLYDMADVWVKIQDVLQMLLTEYLDMKNTRTASEPSAQLSYASTGREFAAFFAKKKPQRPKNSLFKFESSSHAISMSAYLREQRRELYSRSGELQGGPDDNLIEGGGTKFVCKPGARNITVIFHPLLRFIQEIEHALGLGPAKQCPLREFLTVYIKSIFLNQVLAEINKEIEGVTKTSDPLKILANADTMKVLGVQRPLLQVSAVESLEGPLLQVEGLSDLRLELHSKKMNLHLVLIEELHRHLYIKSTSRVVQRNKEKGKMSSHGKDPSPGPLIDVSNIPTPRKFLDASQYSAAGGSSVREMNLQDVKEDLECDPEENSTLFMGILIQGLARLKKIPETVKAIKERLEQELKQIVKRSTTQVADSAYQRGESLTVDNQPRLLLELLELLFDKFNAVATAHSVVLGYLQDSVGTQLTQQEEIKLYDMADVWVKIQDVLQMLLTEYLDMKNTRTASEPSAQLSYASTGREFAAFFAKKKPQRPKNSLFKFESSSHAISMSAYLREQRRELYSRSGELQGGPDDNLIEGGGTKFVCKPGARNITVIFHPLLRFIQEIEHALGLGPAKQCPLREFLTVYIKSIFLNQVLAEINKEIEGVTKTSDPLKILANADTMKVLGVQRPLLQ
IRESfinder result
IRESfinder score
0.543278722
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page