top of page
mmu_circExoc4_1046
Basic information of circular RNA
PanCircBase ID:
mmu_circExoc4_1046
mm39_Chr. Position ID:
chr6|33273667|33557013|+
Gene name:
Exoc4
Transcript:
ENSMUST00000052266.15
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
4,5,6,7,8,9,10
Exon/intron offsets:
0,8552,35478,51050,141647,145218,283249
Genomic length:
283346
Exon/intron sizes in nt:
185,110,244,175,146,89,97
Flanking exon/introns:
chr6:33254316-33273667|chr6:33557013-33734901
Splice length:
1046
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGTCAGCAGTGGAGTCCCTGGAGGGTCCACTGCTCCAGGTGGAAGGGCTCAGTGATCTCAGGCTGGAACTTCACAGCAAGAAGATGAACCTGCACTTGGTTCTCATAGAGGAACTGCACCGCCATCTGTATATCAAATCCACTAGCCGGGTGGTACAGCGTAACAAGGAAAAGGGGAAGATGAGTTCTCATGGCAAAGATCCCTCTCCTGGTCCTCTGATTGATGTTTCAAACATCCCTACTCCACGCAAATTCCTTGATGCTTCTCAATATTCTGCTGCTGGAGGCTCAAGTGTGAGGGAGATGAACCTGCAAGACGTCAAGGAGGACTTGGAGTGTGACCCAGAGGAGAACAGCACTCTTTTCATGGGAATTCTTATTCAGGGCCTGGCCAGACTGAAGAAGATCCCTGAGACAGTTAAAGCCATTAAAGAGCGTCTGGAGCAGGAGCTAAAGCAGATTGTGAAGAGGTCAACCACCCAGGTAGCAGACAGTGCTTATCAGAGGGGAGAGAGCCTCACTGTGGACAATCAGCCAAGGTTACTCCTAGAACTGCTGGAACTGTTGTTTGATAAGTTTAATGCCGTAGCCACTGCACACTCAGTGGTCCTGGGGTACCTCCAGGACTCTGTTGGGACCCAGCTAACACAGCAGGAGGAGATCAAATTATATGACATGGCAGATGTGTGGGTGAAGATCCAGGATGTGCTGCAGATGCTGTTGACTGAGTACTTGGATATGAAGAACACACGCACCGCCTCAGAGCCATCAGCCCAACTAAGCTATGCCAGTACTGGACGAGAGTTCGCAGCCTTTTTTGCCAAGAAGAAACCACAGAGGCCAAAGAATTCTCTTTTCAAGTTTGAATCATCCTCCCATGCTATCAGCATGAGCGCCTATCTCCGAGAACAAAGAAGGGAGCTCTACAGTCGGAGTGGAGAACTCCAGGGAGGTCCTGATGACAACTTAATTGAAGGTGGAGGAACAAAATTTGTCTGCAAACCTGGAGCCAGAAATATTACCGTCATATTCCATCCATTACTGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGGGAGGTCCTGATGACAACT
60.2
GATCACTGAGCCCTTCCACC
60.11
158
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGGGAGGTCCTGATGACAACT
60.2
CAGCCTGAGATCACTGAGCC
60.18
166
PCR template sequence:
AGGGAGGTCCTGATGACAACTTAATTGAAGGTGGAGGAACAAAATTTGTCTGCAAACCTGGAGCCAGAAATATTACCGTCATATTCCATCCATTACTGAGGTGTCAGCAGTGGAGTCCCTGGAGGGTCCACTGCTCCAGGTGGAAGGGCTCAGTGATCTCAGGCTGGAACTTCACAGCAAGAAGATGAACCTGCACTTGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
13
Interacting miRNAs (#binding sites)
mmu-miR-16-5p(1), mmu-miR-15a-5p(1), mmu-miR-15b-5p(1), mmu-miR-146a-5p(1), mmu-miR-326-3p(1), mmu-miR-128-3p(1), mmu-miR-149-5p(1), mmu-miR-431-5p(1), mmu-miR-494-3p(1), mmu-miR-370-3p(1), mmu-miR-541-5p(1), mmu-miR-697(1), mmu-miR-146b-5p(1)
siRNAs for circular RNA silencing
Junction sequence
ATCCATTACTGAGGTGTCAGCAGTGG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCEXOC4_1046_ORF_1
0.906
0.23720932
0.992894904
1050
ORF sequence:
ATGAACCTGCACTTGGTTCTCATAGAGGAACTGCACCGCCATCTGTATATCAAATCCACTAGCCGGGTGGTACAGCGTAACAAGGAAAAGGGGAAGATGAGTTCTCATGGCAAAGATCCCTCTCCTGGTCCTCTGATTGATGTTTCAAACATCCCTACTCCACGCAAATTCCTTGATGCTTCTCAATATTCTGCTGCTGGAGGCTCAAGTGTGAGGGAGATGAACCTGCAAGACGTCAAGGAGGACTTGGAGTGTGACCCAGAGGAGAACAGCACTCTTTTCATGGGAATTCTTATTCAGGGCCTGGCCAGACTGAAGAAGATCCCTGAGACAGTTAAAGCCATTAAAGAGCGTCTGGAGCAGGAGCTAAAGCAGATTGTGAAGAGGTCAACCACCCAGGTAGCAGACAGTGCTTATCAGAGGGGAGAGAGCCTCACTGTGGACAATCAGCCAAGGTTACTCCTAGAACTGCTGGAACTGTTGTTTGATAAGTTTAATGCCGTAGCCACTGCACACTCAGTGGTCCTGGGGTACCTCCAGGACTCTGTTGGGACCCAGCTAACACAGCAGGAGGAGATCAAATTATATGACATGGCAGATGTGTGGGTGAAGATCCAGGATGTGCTGCAGATGCTGTTGACTGAGTACTTGGATATGAAGAACACACGCACCGCCTCAGAGCCATCAGCCCAACTAAGCTATGCCAGTACTGGACGAGAGTTCGCAGCCTTTTTTGCCAAGAAGAAACCACAGAGGCCAAAGAATTCTCTTTTCAAGTTTGAATCATCCTCCCATGCTATCAGCATGAGCGCCTATCTCCGAGAACAAAGAAGGGAGCTCTACAGTCGGAGTGGAGAACTCCAGGGAGGTCCTGATGACAACTTAATTGAAGGTGGAGGAACAAAATTTGTCTGCAAACCTGGAGCCAGAAATATTACCGTCATATTCCATCCATTACTGAGGTGTCAGCAGTGGAGTCCCTGGAGGGTCCACTGCTCCAGGTGGAAGGGCTCAGTGATCTCAGGCTGGAACTTCACAGCAAGAAGATGA
Peptide sequence:
MNLHLVLIEELHRHLYIKSTSRVVQRNKEKGKMSSHGKDPSPGPLIDVSNIPTPRKFLDASQYSAAGGSSVREMNLQDVKEDLECDPEENSTLFMGILIQGLARLKKIPETVKAIKERLEQELKQIVKRSTTQVADSAYQRGESLTVDNQPRLLLELLELLFDKFNAVATAHSVVLGYLQDSVGTQLTQQEEIKLYDMADVWVKIQDVLQMLLTEYLDMKNTRTASEPSAQLSYASTGREFAAFFAKKKPQRPKNSLFKFESSSHAISMSAYLREQRRELYSRSGELQGGPDDNLIEGGGTKFVCKPGARNITVIFHPLLRCQQWSPWRVHCSRWKGSVISGWNFTARR
IRESfinder result
IRESfinder score
0.502753674
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page