top of page
mmu_circEvi5_115
Basic information of circular RNA
PanCircBase ID:
mmu_circEvi5_115
mm39_Chr. Position ID:
chr5|107960223|107961472|-
Gene name:
Evi5
Transcript:
ENSMUST00000112642.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
11,10
Exon/intron offsets:
0,1188
Genomic length:
1249
Exon/intron sizes in nt:
54,61
Flanking exon/introns:
chr5:107947126-107960223|chr5:107961472-107963476
Splice length:
115
Other database IDs:
circAtlas: hsa-SCAF8_0001
Human Ortholog IDs:
Mature spliced Sequence:
ACTTGAAAAAGAATACACTACAATAAAAACTAAAGAAATGGAAGAACAAGGTGAAATTAAAAGGCTACGCACAGAAAATAGGCTTTTAAAACAGCGCATTGAAACATTAGAAAAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGCTACGCACAGAAAATAGGC
59.67
TCACCTTGTTCTTCCATTTCT
55.03
107
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGCTACGCACAGAAAATAGGC
59.67
TCACCTTGTTCTTCCATTTCTT
55.83
107
PCR template sequence:
AAAAGGCTACGCACAGAAAATAGGCTTTTAAAACAGCGCATTGAAACATTAGAAAAAACTTGAAAAAGAATACACTACAATAAAAACTAAAGAAATGGAAGAACAAGGTGAAAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
AACATTAGAAAAAACTTGAAAAAGAA
siRNA sets
TTTTTCAAGTTTTTTCTAA, TTTTCAAGTTTTTTCTAAT, TTCTTTTTCAAGTTTTTTC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCEVI5_115_ORF_1
0.9172
-0.094867084
0.034739307
84
ORF sequence:
ATGGAAGAACAAGGTGAAATTAAAAGGCTACGCACAGAAAATAGGCTTTTAAAACAGCGCATTGAAACATTAGAAAAAACTTGA
Peptide sequence:
MEEQGEIKRLRTENRLLKQRIETLEKT
IRESfinder result
IRESfinder score
0.547136295
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page