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mmu_circEndov_735
Basic information of circular RNA
PanCircBase ID:
mmu_circEndov_735
mm39_Chr. Position ID:
chr11|119382610|119395993|+
Gene name:
Endov
Transcript:
ENSMUST00000106244.9
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
2,3,4,5,6,7,8
Exon/intron offsets:
0,7742,8061,8806,10508,10914,13306
Genomic length:
13383
Exon/intron sizes in nt:
172,135,40,113,69,129,77
Flanking exon/introns:
chr11:119382285-119382610|chr11:119395993-119398027
Splice length:
735
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GGAACAAGCCCGGCTGAAAGCGCGCGTGGTGGATCGGGACACGGAGGCCTGGCAGCGGGACCCCAGCTTCTCGGGCCTGCAGAAGGTCGGGGGCGTGGATGTGTCCTTCGTGAAAGGGGACAGTGTCCGGGCCTGCGCTTCCCTGGTAGTGCTGAGCTACCCCGAGCTCAAGGTGGTGTATGAGGACAGCCGCATGGTTGGCCTGAAGGCCCCCTATGTGTCAGGCTTCCTGGCCTTCCGAGAGGTCCCTTTCCTGGTGGAGTTGGTACAGCGGCTGCAAGAGAAGGAACCAGATCTCATGCCCCAGGTCGTTCTTGTGGATGGAAACGGGGTGCTTCACCAACGAGGCTTCGGGGTGGCCTGCCACCTTGGTGTCCTTACAGAGCTGCCATGCATCGGGGTGGCCAAGAAGCTCCTGCAGGTGGATGGACTGGAGAACAATGCTCTGCACAAGGAGAAGATTGTGCTCCTGCAGGCCGGAGGAGACACATTTCCTCTGATAGGCAGCTCTGGGACTGTCCTGGGAATGGCCCTGAGGAGCCATGACCACAGCACCAAGCCCCTCTATGTCTCTGTGGGCCACAGAATAAGCCTGGAGGTCGCTGTGCGCCTCACCCACCACTGCTGTAGGTTCCGGATCCCAGAACCTATACGCCAGGCTGACATCCGCTCTCGAGAGTACATCCGAAGGACTCTAGGGCAGCTTGGGGTGGCTCCTGCACAGAGAAAGGACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CGCTCTCGAGAGTACATCCG
59.77
CTTCTGCAGGCCCGAGAAG
60.45
153
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCAGAACCTATACGCCAGGC
60.25
CTTCTGCAGGCCCGAGAAG
60.45
180
PCR template sequence:
GGATCCCAGAACCTATACGCCAGGCTGACATCCGCTCTCGAGAGTACATCCGAAGGACTCTAGGGCAGCTTGGGGTGGCTCCTGCACAGAGAAAGGACAGGGAACAAGCCCGGCTGAAAGCGCGCGTGGTGGATCGGGACACGGAGGCCTGGCAGCGGGACCCCAGCTTCTCGGGCCTGCAGAAGGTCGGGGGCGTGGAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-22-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AGAGAAAGGACAGGGAACAAGCCCGG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCENDOV_735_ORF_1
1.2328
0.430366841
0.999656338
1275
ORF sequence:
ATGGTTGGCCTGAAGGCCCCCTATGTGTCAGGCTTCCTGGCCTTCCGAGAGGTCCCTTTCCTGGTGGAGTTGGTACAGCGGCTGCAAGAGAAGGAACCAGATCTCATGCCCCAGGTCGTTCTTGTGGATGGAAACGGGGTGCTTCACCAACGAGGCTTCGGGGTGGCCTGCCACCTTGGTGTCCTTACAGAGCTGCCATGCATCGGGGTGGCCAAGAAGCTCCTGCAGGTGGATGGACTGGAGAACAATGCTCTGCACAAGGAGAAGATTGTGCTCCTGCAGGCCGGAGGAGACACATTTCCTCTGATAGGCAGCTCTGGGACTGTCCTGGGAATGGCCCTGAGGAGCCATGACCACAGCACCAAGCCCCTCTATGTCTCTGTGGGCCACAGAATAAGCCTGGAGGTCGCTGTGCGCCTCACCCACCACTGCTGTAGGTTCCGGATCCCAGAACCTATACGCCAGGCTGACATCCGCTCTCGAGAGTACATCCGAAGGACTCTAGGGCAGCTTGGGGTGGCTCCTGCACAGAGAAAGGACAGGGAACAAGCCCGGCTGAAAGCGCGCGTGGTGGATCGGGACACGGAGGCCTGGCAGCGGGACCCCAGCTTCTCGGGCCTGCAGAAGGTCGGGGGCGTGGATGTGTCCTTCGTGAAAGGGGACAGTGTCCGGGCCTGCGCTTCCCTGGTAGTGCTGAGCTACCCCGAGCTCAAGGTGGTGTATGAGGACAGCCGCATGGTTGGCCTGAAGGCCCCCTATGTGTCAGGCTTCCTGGCCTTCCGAGAGGTCCCTTTCCTGGTGGAGTTGGTACAGCGGCTGCAAGAGAAGGAACCAGATCTCATGCCCCAGGTCGTTCTTGTGGATGGAAACGGGGTGCTTCACCAACGAGGCTTCGGGGTGGCCTGCCACCTTGGTGTCCTTACAGAGCTGCCATGCATCGGGGTGGCCAAGAAGCTCCTGCAGGTGGATGGACTGGAGAACAATGCTCTGCACAAGGAGAAGATTGTGCTCCTGCAGGCCGGAGGAGACACATTTCCTCTGATAGGCAGCTCTGGGACTGTCCTGGGAATGGCCCTGAGGAGCCATGACCACAGCACCAAGCCCCTCTATGTCTCTGTGGGCCACAGAATAAGCCTGGAGGTCGCTGTGCGCCTCACCCACCACTGCTGTAGGTTCCGGATCCCAGAACCTATACGCCAGGCTGACATCCGCTCTCGAGAGTACATCCGAAGGACTCTAGGGCAGCTTGGGGTGGCTCCTGCACAGAGAAAGGAC
Peptide sequence:
MVGLKAPYVSGFLAFREVPFLVELVQRLQEKEPDLMPQVVLVDGNGVLHQRGFGVACHLGVLTELPCIGVAKKLLQVDGLENNALHKEKIVLLQAGGDTFPLIGSSGTVLGMALRSHDHSTKPLYVSVGHRISLEVAVRLTHHCCRFRIPEPIRQADIRSREYIRRTLGQLGVAPAQRKDREQARLKARVVDRDTEAWQRDPSFSGLQKVGGVDVSFVKGDSVRACASLVVLSYPELKVVYEDSRMVGLKAPYVSGFLAFREVPFLVELVQRLQEKEPDLMPQVVLVDGNGVLHQRGFGVACHLGVLTELPCIGVAKKLLQVDGLENNALHKEKIVLLQAGGDTFPLIGSSGTVLGMALRSHDHSTKPLYVSVGHRISLEVAVRLTHHCCRFRIPEPIRQADIRSREYIRRTLGQLGVAPAQRKD
IRESfinder result
IRESfinder score
0.321351512
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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