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mmu_circElapor2_389
Basic information of circular RNA
PanCircBase ID:
mmu_circElapor2_389
mm39_Chr. Position ID:
chr5|9495363|9497821|+
Gene name:
Elapor2
Transcript:
ENSMUST00000155764.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
16,17,18
Exon/intron offsets:
0,1530,2356
Genomic length:
2458
Exon/intron sizes in nt:
1,90,97,102
Flanking exon/introns:
chr5:9491807-9495363|chr5:9497821-9509179
Splice length:
389
Other database IDs:
circAtlas: hsa-SCAF8_0001, CIRCpedia: HSA_CIRCpedia_163059
Human Ortholog IDs:
Mature spliced Sequence:
GGGAGAAAGATGGCTCTCTGTACCAACAATATTTCAGACTTTACGGTAAAGGAAATGGTGACAGGGTCAGATGATTACACAAATTTGGTTGGAGCATTTGTATGCCAGTCAACTATTATTCCTTCTGAAAGTAAGGGCTTCCGGGCAGCCCTGTCGTCACAGTCTATCATTCTGGCAGATATGTTTTTAGGTGTCACTGTTGACACTGCCTTGCAAAACGTTAATATCAAGGAGGATATGTTCCCAGTGTCACCGAGCCAAGTACCAGATGTTCATTTCTTTTATAAGTCTTCCACAGCCACCACATCTTGTATTAATGGACGATCGACTGCTGTGAAGATGAGGTGTAATCCCATGAGACCTGGTGCAGGTGTGATATCAGTCCCCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CTTCCACAGCCACCACATCT
59.96
TCTGACCCTGTCACCATTTCC
59.65
171
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CTTCCACAGCCACCACATCT
59.96
CTGACCCTGTCACCATTTCCT
59.65
170
PCR template sequence:
CTTCCACAGCCACCACATCTTGTATTAATGGACGATCGACTGCTGTGAAGATGAGGTGTAATCCCATGAGACCTGGTGCAGGTGTGATATCAGTCCCCAGGGGAGAAAGATGGCTCTCTGTACCAACAATATTTCAGACTTTACGGTAAAGGAAATGGTGACAGGGTCAGATGATTACACAAATTTGGTTGGAGCATTTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-7b-5p(1), mmu-miR-34c-5p(1), mmu-miR-34a-5p(1), mmu-miR-7a-5p(1), mmu-miR-34b-5p(1), mmu-miR-296-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TATCAGTCCCCAGGGGAGAAAGATGG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCELAPOR2_389_ORF_1
0.9414
-0.012023289
0.386041387
429
ORF sequence:
ATGGCTCTCTGTACCAACAATATTTCAGACTTTACGGTAAAGGAAATGGTGACAGGGTCAGATGATTACACAAATTTGGTTGGAGCATTTGTATGCCAGTCAACTATTATTCCTTCTGAAAGTAAGGGCTTCCGGGCAGCCCTGTCGTCACAGTCTATCATTCTGGCAGATATGTTTTTAGGTGTCACTGTTGACACTGCCTTGCAAAACGTTAATATCAAGGAGGATATGTTCCCAGTGTCACCGAGCCAAGTACCAGATGTTCATTTCTTTTATAAGTCTTCCACAGCCACCACATCTTGTATTAATGGACGATCGACTGCTGTGAAGATGAGGTGTAATCCCATGAGACCTGGTGCAGGTGTGATATCAGTCCCCAGGGGAGAAAGATGGCTCTCTGTACCAACAATATTTCAGACTTTACGGTAA
Peptide sequence:
MALCTNNISDFTVKEMVTGSDDYTNLVGAFVCQSTIIPSESKGFRAALSSQSIILADMFLGVTVDTALQNVNIKEDMFPVSPSQVPDVHFFYKSSTATTSCINGRSTAVKMRCNPMRPGAGVISVPRGERWLSVPTIFQTLR
IRESfinder result
IRESfinder score
0.672080753
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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