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mmu_circElapor2_310_1
Basic information of circular RNA
PanCircBase ID:
mmu_circElapor2_310_1
mm39_Chr. Position ID:
chr5|9449180|9460697|+
Gene name:
Elapor2
Transcript:
ENSMUST00000154662.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
3,4
Exon/intron offsets:
0,11403
Genomic length:
11517
Exon/intron sizes in nt:
1,96,114
Flanking exon/introns:
chr5:9430398-9449180|chr5:9460697-9467984
Splice length:
310
Other database IDs:
circAtlas: mmu-9330182L06Rik_0039
Human Ortholog IDs:
Mature spliced Sequence:
CTTTCTCCTGTGCTTCTGGAGAGTATCTAGAAATGAAGAACCAGGTATGCAGTAAATGTGTGGAAGGCACCTACTCCTTGGGCAGTGGCATCAAATTTGATGAATGGGATGAATTGCCGGCAGGATTTTCCAACGTTGCAACATTCATGGACACTGTGGTGGGCCCTTCTGACAGCAGGCCAGATGGCTGTAACAACTCTTCTTGGCTTCCTCGTGGGAACTATATAGAGTCTAACCGTGATGACTGCACTGTGTCTTTGATCTACGCTGTGCACCTGAAGAAGTCTGGCTACGTCTTCTTTGAGTACCA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AACCGTGATGACTGCACTGT
59.89
CACTGCCCAAGGAGTAGGTG
60.04
164
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AACCGTGATGACTGCACTGT
59.89
GGAGTAGGTGCCTTCCACAC
60.04
154
PCR template sequence:
CTCGTGGGAACTATATAGAGTCTAACCGTGATGACTGCACTGTGTCTTTGATCTACGCTGTGCACCTGAAGAAGTCTGGCTACGTCTTCTTTGAGTACCACTTTCTCCTGTGCTTCTGGAGAGTATCTAGAAATGAAGAACCAGGTATGCAGTAAATGTGTGGAAGGCACCTACTCCTTGGGCAGTGGCATCAAATTTGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-324-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TCTTTGAGTACCACTTTCTCCTGTGC
siRNA sets
ACAGGAGAAAGTGGTACTC,AGAAAGTGGTACTCAAAGA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCELAPOR2_310_1_ORF_1
0.6917
0.18791406
0.310027938
333
ORF sequence:
ATGAAGAACCAGGTATGCAGTAAATGTGTGGAAGGCACCTACTCCTTGGGCAGTGGCATCAAATTTGATGAATGGGATGAATTGCCGGCAGGATTTTCCAACGTTGCAACATTCATGGACACTGTGGTGGGCCCTTCTGACAGCAGGCCAGATGGCTGTAACAACTCTTCTTGGCTTCCTCGTGGGAACTATATAGAGTCTAACCGTGATGACTGCACTGTGTCTTTGATCTACGCTGTGCACCTGAAGAAGTCTGGCTACGTCTTCTTTGAGTACCACTTTCTCCTGTGCTTCTGGAGAGTATCTAGAAATGAAGAACCAGGTATGCAGTAA
Peptide sequence:
MKNQVCSKCVEGTYSLGSGIKFDEWDELPAGFSNVATFMDTVVGPSDSRPDGCNNSSWLPRGNYIESNRDDCTVSLIYAVHLKKSGYVFFEYHFLLCFWRVSRNEEPGMQ
IRESfinder result
IRESfinder score
0.582569982
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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