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mmu_circElapor2_2243
Basic information of circular RNA
PanCircBase ID:
mmu_circElapor2_2243
mm39_Chr. Position ID:
chr5|9449180|9497821|+
Gene name:
Elapor2
Transcript:
ENSMUST00000155764.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
16
Exon/intron indexes:
3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18
Exon/intron offsets:
0,11403,18804,21436,22324,23121,28509,29224,35440,36146,38525,41544,42453,46183,47713,48539
Genomic length:
48641
Exon/intron sizes in nt:
196,148,87,106,153,89,181,129,91,103,138,259,174,190,97,102
Flanking exon/introns:
chr5:9430398-9449180|chr5:9497821-9509179
Splice length:
2243
Other database IDs:
CIRCpedia: MMU_CIRCpedia_223368, circAtlas: mmu-9330182L06Rik_0015
circAtlas: hsa-KIAA1324L_0019
Human Ortholog IDs:
Mature spliced Sequence:
CTTTCTCCTGTGCTTCTGGAGAGTATCTAGAAATGAAGAACCAGGTATGCAGTAAATGTGTGGAAGGCACCTACTCCTTGGGCAGTGGCATCAAATTTGATGAATGGGATGAATTGCCGGCAGGATTTTCCAACGTTGCAACATTCATGGACACTGTGGTGGGCCCTTCTGACAGCAGGCCAGATGGCTGTAACAACTCTTCTTGGCTTCCTCGTGGGAACTATATAGAGTCTAACCGTGATGACTGCACTGTGTCTTTGATCTACGCTGTGCACCTGAAGAAGTCTGGCTACGTCTTCTTTGAGTACCAGTACGTGGACAACAACATCTTCTTTGAGTTCTTTATTCAGAATGACCAGTGCCAGGAGATGGATGCCACCACAGACAAGTGGGTGAAGCTCACAGACAATGGAGAATGGGGCTCCCATTCTGTAATGCTGAAATCAGGCACAAATATTCTGTACTGGAGAACGACAGGCATCCTTATGGGTTCTAAGGCAGTCAAGCCCGTGCTAGTAAAGAATATCACCATCGAAGGGGTGGCATACACCTCAGAGTGCTTTCCATGTAAGCCAGGCACTTTCAGCAACAAACCAGGCTCATTTAACTGCCAGATGTGTCCCAGAAACACCTATTCTGAGAAGGGTGCTAAAGAATGTATTAGGTGTAAGGAGGACTCCCAGTTTTCAGAGGAAGGAGCCAGTGAGTGTGTGGATCGCCCACCCTGCACTACCAAAGACTATTTCCAGATCCATACCCCCTGTGACGAAGAAGGGAAGACACAGATAATGTACAAGTGGATAGAGCCAAAAATCTGCAGGGAGGATCTCACAGATGCTATTAGGCTGCCCCCTTCTGGAGAGAAGAAGGATTGTCCTCCTTGCAACCCAGGATTCTATAACAATGGATCGTCTTCTTGCCATCCCTGCCCTCCGGGGACGTTTTCAGATGGAACAAAGGAATGCAAGTCATGTCCGGCCGGAACAGAGCCAGCACTTGGGTTTGAATATAAATGGTGGAATGTCCTCCCTGCCAACATGAAAACTTCCTGCTTCAATGTTGGGAATTCCAAGTGCGATGGAATGAACGGTTGGGAGGTGGCTGGAGATCACATCCGGAGTGGAGCTGGAGGCTCTGACAATGACTATCTCATCTTAAACTTGCACATCCCAGGATTTAAACCACCAACGTCTATGACTGGAGCCACAGGTTCGGAACTGGGAAGGATAACATTTGTGTTTGAGACTCTCTGCTCAGCTGACTGTGTTTTGTACTTCATGGTGGATATAAATAGAAAAAGCACCAATGTGGTGGAATCATGGGGAGGAACCAAAGAAAAGCAAGCTTATACGCATGTCATATTCAAGAATGCAACGTTTACATTTACATGGGCGTTCCAGAGGACAAACCAAGGTCAAGATACGATTCATCAATGATGTGGTGAAGATTTATTCTATCACAGCCACTAATGCAGTTGATGGGGTAGCAGCGTCATGTCGTGCCTGTGCCCTGGGCTCTGAGCAGTCGGCCTCATCATGTGTACCCTGCCCCCCAGGCCACTACATTGAGAAGGAAACCAACCAGTGCAAGGAGTGTCCAGCTGACACCTACCTGTCCATCCACCAGGTCTATGGCAAGGAAGCTTGCATTCCGTGTGGGCCTGGAAGTAAAAGCACCCAGGACCACTCGCTTTGCTATAGCGACTGCTTTTTCTACCATGAAAAAGAAAACCAGACTCTGCACTATGACTTCCGCAACCTCAGCAGTGTAGGCTCGCTGATGAATGGCCCCAGCTTCACCTCCAAGGGAACGAAATACTTCCATTTCTTCAATATCAGTTTATGTGGACATGAGGGGAGAAAGATGGCTCTCTGTACCAACAATATTTCAGACTTTACGGTAAAGGAAATGGTGACAGGGTCAGATGATTACACAAATTTGGTTGGAGCATTTGTATGCCAGTCAACTATTATTCCTTCTGAAAGTAAGGGCTTCCGGGCAGCCCTGTCGTCACAGTCTATCATTCTGGCAGATATGTTTTTAGGTGTCACTGTTGACACTGCCTTGCAAAACGTTAATATCAAGGAGGATATGTTCCCAGTGTCACCGAGCCAAGTACCAGATGTTCATTTCTTTTATAAGTCTTCCACAGCCACCACATCTTGTATTAATGGACGATCGACTGCTGTGAAGATGAGGTGTAATCCCATGAGACCTGGTGCAGGTGTGATATCAGTCCCCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CTTCCACAGCCACCACATCT
59.96
GGAGTAGGTGCCTTCCACAC
60.04
177
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGACGATCGACTGCTGTGAA
60.11
CACTGCCCAAGGAGTAGGTG
60.04
158
PCR template sequence:
CTTCCACAGCCACCACATCTTGTATTAATGGACGATCGACTGCTGTGAAGATGAGGTGTAATCCCATGAGACCTGGTGCAGGTGTGATATCAGTCCCCAGCTTTCTCCTGTGCTTCTGGAGAGTATCTAGAAATGAAGAACCAGGTATGCAGTAAATGTGTGGAAGGCACCTACTCCTTGGGCAGTGGCATCAAATTTGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
18
Interacting miRNAs (#binding sites)
mmu-miR-149-5p(2), mmu-miR-9-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-7b-5p(1), mmu-miR-150-5p(1), mmu-miR-135a-5p(1), mmu-miR-34c-5p(1), mmu-miR-34a-5p(1), mmu-miR-31-5p(1), mmu-miR-217-5p(1), mmu-miR-7a-5p(1), mmu-miR-136-5p(1), mmu-miR-218-5p(1), mmu-miR-324-3p(1), mmu-miR-34b-5p(1), mmu-miR-296-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TATCAGTCCCCAGCTTTCTCCTGTGC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCELAPOR2_2243_ORF_3
0.6346
0.10518959
0.968569793
993
ORF sequence:
ATGTGGTGGAATCATGGGGAGGAACCAAAGAAAAGCAAGCTTATACGCATGTCATATTCAAGAATGCAACGTTTACATTTACATGGGCGTTCCAGAGGACAAACCAAGGTCAAGATACGATTCATCAATGATGTGGTGAAGATTTATTCTATCACAGCCACTAATGCAGTTGATGGGGTAGCAGCGTCATGTCGTGCCTGTGCCCTGGGCTCTGAGCAGTCGGCCTCATCATGTGTACCCTGCCCCCCAGGCCACTACATTGAGAAGGAAACCAACCAGTGCAAGGAGTGTCCAGCTGACACCTACCTGTCCATCCACCAGGTCTATGGCAAGGAAGCTTGCATTCCGTGTGGGCCTGGAAGTAAAAGCACCCAGGACCACTCGCTTTGCTATAGCGACTGCTTTTTCTACCATGAAAAAGAAAACCAGACTCTGCACTATGACTTCCGCAACCTCAGCAGTGTAGGCTCGCTGATGAATGGCCCCAGCTTCACCTCCAAGGGAACGAAATACTTCCATTTCTTCAATATCAGTTTATGTGGACATGAGGGGAGAAAGATGGCTCTCTGTACCAACAATATTTCAGACTTTACGGTAAAGGAAATGGTGACAGGGTCAGATGATTACACAAATTTGGTTGGAGCATTTGTATGCCAGTCAACTATTATTCCTTCTGAAAGTAAGGGCTTCCGGGCAGCCCTGTCGTCACAGTCTATCATTCTGGCAGATATGTTTTTAGGTGTCACTGTTGACACTGCCTTGCAAAACGTTAATATCAAGGAGGATATGTTCCCAGTGTCACCGAGCCAAGTACCAGATGTTCATTTCTTTTATAAGTCTTCCACAGCCACCACATCTTGTATTAATGGACGATCGACTGCTGTGAAGATGAGGTGTAATCCCATGAGACCTGGTGCAGGTGTGATATCAGTCCCCAGCTTTCTCCTGTGCTTCTGGAGAGTATCTAGAAATGAAGAACCAGGTATGCAGTAA
Peptide sequence:
MWWNHGEEPKKSKLIRMSYSRMQRLHLHGRSRGQTKVKIRFINDVVKIYSITATNAVDGVAASCRACALGSEQSASSCVPCPPGHYIEKETNQCKECPADTYLSIHQVYGKEACIPCGPGSKSTQDHSLCYSDCFFYHEKENQTLHYDFRNLSSVGSLMNGPSFTSKGTKYFHFFNISLCGHEGRKMALCTNNISDFTVKEMVTGSDDYTNLVGAFVCQSTIIPSESKGFRAALSSQSIILADMFLGVTVDTALQNVNIKEDMFPVSPSQVPDVHFFYKSSTATTSCINGRSTAVKMRCNPMRPGAGVISVPSFLLCFWRVSRNEEPGMQ
IRESfinder result
IRESfinder score
0.532709257
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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