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mmu_circElapor2_1510
Basic information of circular RNA
PanCircBase ID:
mmu_circElapor2_1510
mm39_Chr. Position ID:
chr5|9467984|9491807|+
Gene name:
Elapor2
Transcript:
ENSMUST00000155764.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
11
Exon/intron indexes:
5,6,7,8,9,10,11,12,13,14,15
Exon/intron offsets:
0,2632,3520,4317,9705,10420,16636,17342,19721,22740,23649
Genomic length:
23823
Exon/intron sizes in nt:
87,106,153,89,181,129,91,103,138,259,174
Flanking exon/introns:
chr5:9460731-9467984|chr5:9491807-9495363
Splice length:
1510
Other database IDs:
circAtlas: hsa-KIAA1324L_0049
Human Ortholog IDs:
Mature spliced Sequence:
ATTCAGAATGACCAGTGCCAGGAGATGGATGCCACCACAGACAAGTGGGTGAAGCTCACAGACAATGGAGAATGGGGCTCCCATTCTGTAATGCTGAAATCAGGCACAAATATTCTGTACTGGAGAACGACAGGCATCCTTATGGGTTCTAAGGCAGTCAAGCCCGTGCTAGTAAAGAATATCACCATCGAAGGGGTGGCATACACCTCAGAGTGCTTTCCATGTAAGCCAGGCACTTTCAGCAACAAACCAGGCTCATTTAACTGCCAGATGTGTCCCAGAAACACCTATTCTGAGAAGGGTGCTAAAGAATGTATTAGGTGTAAGGAGGACTCCCAGTTTTCAGAGGAAGGAGCCAGTGAGTGTGTGGATCGCCCACCCTGCACTACCAAAGACTATTTCCAGATCCATACCCCCTGTGACGAAGAAGGGAAGACACAGATAATGTACAAGTGGATAGAGCCAAAAATCTGCAGGGAGGATCTCACAGATGCTATTAGGCTGCCCCCTTCTGGAGAGAAGAAGGATTGTCCTCCTTGCAACCCAGGATTCTATAACAATGGATCGTCTTCTTGCCATCCCTGCCCTCCGGGGACGTTTTCAGATGGAACAAAGGAATGCAAGTCATGTCCGGCCGGAACAGAGCCAGCACTTGGGTTTGAATATAAATGGTGGAATGTCCTCCCTGCCAACATGAAAACTTCCTGCTTCAATGTTGGGAATTCCAAGTGCGATGGAATGAACGGTTGGGAGGTGGCTGGAGATCACATCCGGAGTGGAGCTGGAGGCTCTGACAATGACTATCTCATCTTAAACTTGCACATCCCAGGATTTAAACCACCAACGTCTATGACTGGAGCCACAGGTTCGGAACTGGGAAGGATAACATTTGTGTTTGAGACTCTCTGCTCAGCTGACTGTGTTTTGTACTTCATGGTGGATATAAATAGAAAAAGCACCAATGTGGTGGAATCATGGGGAGGAACCAAAGAAAAGCAAGCTTATACGCATGTCATATTCAAGAATGCAACGTTTACATTTACATGGGCGTTCCAGAGGACAAACCAAGGTCAAGATACGATTCATCAATGATGTGGTGAAGATTTATTCTATCACAGCCACTAATGCAGTTGATGGGGTAGCAGCGTCATGTCGTGCCTGTGCCCTGGGCTCTGAGCAGTCGGCCTCATCATGTGTACCCTGCCCCCCAGGCCACTACATTGAGAAGGAAACCAACCAGTGCAAGGAGTGTCCAGCTGACACCTACCTGTCCATCCACCAGGTCTATGGCAAGGAAGCTTGCATTCCGTGTGGGCCTGGAAGTAAAAGCACCCAGGACCACTCGCTTTGCTATAGCGACTGCTTTTTCTACCATGAAAAAGAAAACCAGACTCTGCACTATGACTTCCGCAACCTCAGCAGTGTAGGCTCGCTGATGAATGGCCCCAGCTTCACCTCCAAGGGAACGAAATACTTCCATTTCTTCAATATCAGTTTATGTGGACATGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TAGGCTCGCTGATGAATGGC
60.25
TGTCTGTGAGCTTCACCCAC
59.89
150
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CAACCTCAGCAGTGTAGGCT
59.68
TGTCTGTGGTGGCATCCATC
60.04
143
PCR template sequence:
CAACCTCAGCAGTGTAGGCTCGCTGATGAATGGCCCCAGCTTCACCTCCAAGGGAACGAAATACTTCCATTTCTTCAATATCAGTTTATGTGGACATGAGATTCAGAATGACCAGTGCCAGGAGATGGATGCCACCACAGACAAGTGGGTGAAGCTCACAGACAATGGAGAATGGGGCTCCCATTCTGTAATGCTGAAAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
11
Interacting miRNAs (#binding sites)
mmu-miR-149-5p(2), mmu-miR-9-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-150-5p(1), mmu-miR-135a-5p(1), mmu-miR-31-5p(1), mmu-miR-217-5p(1), mmu-miR-136-5p(1), mmu-miR-218-5p(1)
siRNAs for circular RNA silencing
Junction sequence
ATGTGGACATGAGATTCAGAATGACC
siRNA sets
CATTCTGAATCTCATGTCC, ATTCTGAATCTCATGTCCA, TTCTGAATCTCATGTCCAC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCELAPOR2_1510_ORF_1
0.7356
0.136518131
0.999787085
1641
ORF sequence:
ATGTGGTGGAATCATGGGGAGGAACCAAAGAAAAGCAAGCTTATACGCATGTCATATTCAAGAATGCAACGTTTACATTTACATGGGCGTTCCAGAGGACAAACCAAGGTCAAGATACGATTCATCAATGATGTGGTGAAGATTTATTCTATCACAGCCACTAATGCAGTTGATGGGGTAGCAGCGTCATGTCGTGCCTGTGCCCTGGGCTCTGAGCAGTCGGCCTCATCATGTGTACCCTGCCCCCCAGGCCACTACATTGAGAAGGAAACCAACCAGTGCAAGGAGTGTCCAGCTGACACCTACCTGTCCATCCACCAGGTCTATGGCAAGGAAGCTTGCATTCCGTGTGGGCCTGGAAGTAAAAGCACCCAGGACCACTCGCTTTGCTATAGCGACTGCTTTTTCTACCATGAAAAAGAAAACCAGACTCTGCACTATGACTTCCGCAACCTCAGCAGTGTAGGCTCGCTGATGAATGGCCCCAGCTTCACCTCCAAGGGAACGAAATACTTCCATTTCTTCAATATCAGTTTATGTGGACATGAGATTCAGAATGACCAGTGCCAGGAGATGGATGCCACCACAGACAAGTGGGTGAAGCTCACAGACAATGGAGAATGGGGCTCCCATTCTGTAATGCTGAAATCAGGCACAAATATTCTGTACTGGAGAACGACAGGCATCCTTATGGGTTCTAAGGCAGTCAAGCCCGTGCTAGTAAAGAATATCACCATCGAAGGGGTGGCATACACCTCAGAGTGCTTTCCATGTAAGCCAGGCACTTTCAGCAACAAACCAGGCTCATTTAACTGCCAGATGTGTCCCAGAAACACCTATTCTGAGAAGGGTGCTAAAGAATGTATTAGGTGTAAGGAGGACTCCCAGTTTTCAGAGGAAGGAGCCAGTGAGTGTGTGGATCGCCCACCCTGCACTACCAAAGACTATTTCCAGATCCATACCCCCTGTGACGAAGAAGGGAAGACACAGATAATGTACAAGTGGATAGAGCCAAAAATCTGCAGGGAGGATCTCACAGATGCTATTAGGCTGCCCCCTTCTGGAGAGAAGAAGGATTGTCCTCCTTGCAACCCAGGATTCTATAACAATGGATCGTCTTCTTGCCATCCCTGCCCTCCGGGGACGTTTTCAGATGGAACAAAGGAATGCAAGTCATGTCCGGCCGGAACAGAGCCAGCACTTGGGTTTGAATATAAATGGTGGAATGTCCTCCCTGCCAACATGAAAACTTCCTGCTTCAATGTTGGGAATTCCAAGTGCGATGGAATGAACGGTTGGGAGGTGGCTGGAGATCACATCCGGAGTGGAGCTGGAGGCTCTGACAATGACTATCTCATCTTAAACTTGCACATCCCAGGATTTAAACCACCAACGTCTATGACTGGAGCCACAGGTTCGGAACTGGGAAGGATAACATTTGTGTTTGAGACTCTCTGCTCAGCTGACTGTGTTTTGTACTTCATGGTGGATATAAATAGAAAAAGCACCAATGTGGTGGAATCATGGGGAGGAACCAAAGAAAAGCAAGCTTATACGCATGTCATATTCAAGAATGCAACGTTTACATTTACATGGGCGTTCCAGAGGACAAACCAAGGTCAAGATACGATTCATCAATGA
Peptide sequence:
MWWNHGEEPKKSKLIRMSYSRMQRLHLHGRSRGQTKVKIRFINDVVKIYSITATNAVDGVAASCRACALGSEQSASSCVPCPPGHYIEKETNQCKECPADTYLSIHQVYGKEACIPCGPGSKSTQDHSLCYSDCFFYHEKENQTLHYDFRNLSSVGSLMNGPSFTSKGTKYFHFFNISLCGHEIQNDQCQEMDATTDKWVKLTDNGEWGSHSVMLKSGTNILYWRTTGILMGSKAVKPVLVKNITIEGVAYTSECFPCKPGTFSNKPGSFNCQMCPRNTYSEKGAKECIRCKEDSQFSEEGASECVDRPPCTTKDYFQIHTPCDEEGKTQIMYKWIEPKICREDLTDAIRLPPSGEKKDCPPCNPGFYNNGSSSCHPCPPGTFSDGTKECKSCPAGTEPALGFEYKWWNVLPANMKTSCFNVGNSKCDGMNGWEVAGDHIRSGAGGSDNDYLILNLHIPGFKPPTSMTGATGSELGRITFVFETLCSADCVLYFMVDINRKSTNVVESWGGTKEKQAYTHVIFKNATFTFTWAFQRTNQGQDTIHQ
IRESfinder result
IRESfinder score
0.456427511
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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