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mmu_circDysf_507
Basic information of circular RNA
PanCircBase ID:
mmu_circDysf_507
mm39_Chr. Position ID:
chr6|84126656|84129391|+
Gene name:
Dysf
Transcript:
ENSMUST00000113821.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
37,38,39,40
Exon/intron offsets:
0,199,2209,2658
Genomic length:
2735
Exon/intron sizes in nt:
102,162,166,77
Flanking exon/introns:
chr6:84118934-84126656|chr6:84129391-84156653
Splice length:
507
Other database IDs:
CIRCpedia: MMU_CIRCpedia_38207, circAtlas: mmu-Dysf_0001
circBase: hsa_circ_0055160, circAtlas: hsa-DYSF_0001, CIRCpedia: HSA_CIRCpedia_42252
Human Ortholog IDs:
Mature spliced Sequence:
ACGGAGGACACAGATTTGCCTTACCCACCACCTCAAAGGGAGGCCAACATCTACATGGTTCCCCAGAACATTAAGCCAGCTCTCCAACGTACTGCCATTGAGATCCTGGCCTGGGGCCTGCGGAACATGAAGAGCTATCAGATGGCCAGCATCTCTTCCCCCAGCCTCGTGGTGGAGTGTGGTGGGCAGACAGTGCAGTCCTGTGTCATCAGAAACCTTCGGAAGAACCCCAACTTTGATGTCTGTACTCTCTTCATGGAAGTGATGTTACCCAGAGAGGACCTCTACTGTCCACCTATTGTGGTCAAGGTCATTGATAATCGCCAGTTTGGCCGCCGGCCAGTTGTGGGTCAGTGTACCATTCGCTCCCTGGAGAACTTCCTGTGCGACCCATACTCAGCAGAGAGTCCATCCCCACAGGGTGGCCCAGATGATGTGAGCTTACTCAGCCCCGGGGAAGATGTGCTGATTGACATCGATGACAAGGAGCCTCTCATTCCTGTCCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGCCCAGATGATGTGAGCTT
60.11
GTACGTTGGAGAGCTGGCTT
60.04
176
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCGGGGAAGATGTGCTGATT
60.11
GTACGTTGGAGAGCTGGCTT
60.04
148
PCR template sequence:
TCCATCCCCACAGGGTGGCCCAGATGATGTGAGCTTACTCAGCCCCGGGGAAGATGTGCTGATTGACATCGATGACAAGGAGCCTCTCATTCCTGTCCAGACGGAGGACACAGATTTGCCTTACCCACCACCTCAAAGGGAGGCCAACATCTACATGGTTCCCCAGAACATTAAGCCAGCTCTCCAACGTACTGCCATTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-193b-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CATTCCTGTCCAGACGGAGGACACAG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCDYSF_507_ORF_1
1.2261
0.408785562
0.996360714
960
ORF sequence:
ATGGTTCCCCAGAACATTAAGCCAGCTCTCCAACGTACTGCCATTGAGATCCTGGCCTGGGGCCTGCGGAACATGAAGAGCTATCAGATGGCCAGCATCTCTTCCCCCAGCCTCGTGGTGGAGTGTGGTGGGCAGACAGTGCAGTCCTGTGTCATCAGAAACCTTCGGAAGAACCCCAACTTTGATGTCTGTACTCTCTTCATGGAAGTGATGTTACCCAGAGAGGACCTCTACTGTCCACCTATTGTGGTCAAGGTCATTGATAATCGCCAGTTTGGCCGCCGGCCAGTTGTGGGTCAGTGTACCATTCGCTCCCTGGAGAACTTCCTGTGCGACCCATACTCAGCAGAGAGTCCATCCCCACAGGGTGGCCCAGATGATGTGAGCTTACTCAGCCCCGGGGAAGATGTGCTGATTGACATCGATGACAAGGAGCCTCTCATTCCTGTCCAGACGGAGGACACAGATTTGCCTTACCCACCACCTCAAAGGGAGGCCAACATCTACATGGTTCCCCAGAACATTAAGCCAGCTCTCCAACGTACTGCCATTGAGATCCTGGCCTGGGGCCTGCGGAACATGAAGAGCTATCAGATGGCCAGCATCTCTTCCCCCAGCCTCGTGGTGGAGTGTGGTGGGCAGACAGTGCAGTCCTGTGTCATCAGAAACCTTCGGAAGAACCCCAACTTTGATGTCTGTACTCTCTTCATGGAAGTGATGTTACCCAGAGAGGACCTCTACTGTCCACCTATTGTGGTCAAGGTCATTGATAATCGCCAGTTTGGCCGCCGGCCAGTTGTGGGTCAGTGTACCATTCGCTCCCTGGAGAACTTCCTGTGCGACCCATACTCAGCAGAGAGTCCATCCCCACAGGGTGGCCCAGATGATGTGAGCTTACTCAGCCCCGGGGAAGATGTGCTGATTGACATCGATGACAAGGAGCCTCTCATTCCTGTCCAG
Peptide sequence:
MVPQNIKPALQRTAIEILAWGLRNMKSYQMASISSPSLVVECGGQTVQSCVIRNLRKNPNFDVCTLFMEVMLPREDLYCPPIVVKVIDNRQFGRRPVVGQCTIRSLENFLCDPYSAESPSPQGGPDDVSLLSPGEDVLIDIDDKEPLIPVQTEDTDLPYPPPQREANIYMVPQNIKPALQRTAIEILAWGLRNMKSYQMASISSPSLVVECGGQTVQSCVIRNLRKNPNFDVCTLFMEVMLPREDLYCPPIVVKVIDNRQFGRRPVVGQCTIRSLENFLCDPYSAESPSPQGGPDDVSLLSPGEDVLIDIDDKEPLIPVQ
IRESfinder result
IRESfinder score
0.481023633
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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