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mmu_circDyrk1a_86
Basic information of circular RNA
PanCircBase ID:
mmu_circDyrk1a_86
mm39_Chr. Position ID:
chr16|94412277|94412363|+
Gene name:
Dyrk1a
Transcript:
ENSMUST00000119878.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
1
Exon/intron indexes:
2
Exon/intron offsets:
0
Genomic length:
86
Exon/intron sizes in nt:
86
Flanking exon/introns:
chr16:94371393-94412277|chr16:94412363-94460355
Splice length:
86
Other database IDs:
circBase: hsa_circ_0061690, CIRCpedia: HSA_CIRCpedia_35465
Human Ortholog IDs:
Mature spliced Sequence:
TGTTATAGTTTTGCCGCTGGACTCTTCCCTCCCTTCCCCCACCCCATCAGGATGATATGAGACTTGAAAGAAGACGATGCATACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GAGACTTGAAAGAAGACGATGCA
59.01
GGGAAGGGAGGGAAGAGTCC
60.98
66
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GAGACTTGAAAGAAGACGATGCA
59.01
GGGGAAGGGAGGGAAGAGTC
60.98
67
PCR template sequence:
CCATCAGGATGATATGAGACTTGAAAGAAGACGATGCATACAGTGTTATAGTTTTGCCGCTGGACTCTTCCCTCCCTTCCCCCACC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
ACGATGCATACAGTGTTATAGTTTTG
siRNA sets
AAAACTATAACACTGTATG, AAACTATAACACTGTATGC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCDYRK1A_86_ORF_1
0.9593
-0.30413279
0.017003885
90
ORF sequence:
ATGAGACTTGAAAGAAGACGATGCATACAGTGTTATAGTTTTGCCGCTGGACTCTTCCCTCCCTTCCCCCACCCCATCAGGATGATATGA
Peptide sequence:
MRLERRRCIQCYSFAAGLFPPFPHPIRMI
IRESfinder result
IRESfinder score
0.652132819
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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