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mmu_circDync2h1_1116
Basic information of circular RNA
PanCircBase ID:
mmu_circDync2h1_1116
mm39_Chr. Position ID:
chr9|6935238|6996939|-
Gene name:
Dync2h1
Transcript:
ENSMUST00000048417.13
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
9
Exon/intron indexes:
88,87,86,85,84,83,82,81,80
Exon/intron offsets:
0,5304,6356,20668,31841,48151,57285,58699,61625
Genomic length:
61701
Exon/intron sizes in nt:
117,82,110,90,210,117,105,209,76
Flanking exon/introns:
chr9:6929623-6935238|chr9:6996939-7001340
Splice length:
1116
Other database IDs:
circBase: mmu_circ_0015832, CIRCpedia: MMU_CIRCpedia_27164, circAtlas: mmu-Dync2h1_0028
Human Ortholog IDs:
Mature spliced Sequence:
GGTTGGACCAAGTTTTATGAGTTTTCCTTATCAGATCTTCGGGCCGGGTACCATGTCATTGACAGGCTCTTCGATGGTACCAAAGATGTACAGTGGGAATTTGTACACGGCTTACTTGAAAATTCTATTTATGGAGGACGTGTAGATAACTATTTTGATCTTAGAGTTCTTCAGTCCTACTTGAAGCAGTTTTTTAATTCTTCAATAATTGATGTACTAAACCAAAGGAACAAGAAAAGCATTTTTCCATATTCCATCTCTCTCCCAAACTCGTGCAGCATTTTGGACTACCGTGCTGTCATCGAGAAGCTCCCCGAGGACGATAAGCCCAGCTTCTTCGGTCTGCCCGCCAACATTGCCCGCTCCTCTCAGCGCATGATCAGCTCTCAGGTCATCTCCCAGCTCAGGATCTTGGGAAGATCGGTCACAGCCGGTTGCAAATTTGACAGAGAAATCTGGTCTAATGAACTTTCTCCAGTTCTGAATCTTTGGAAAAAGCTGAACCAGAATTCAAACCTAATTCATCAAAAAGTATCACCACCTAATGATCGACAAGGATCTCCAATATTATCGTTCATCATTCTTGAGCAGTTCAATGCCATCCGCTTGGTACAAAGTGTTCATCAGTCGCTTGCTGCCCTCAGCAAAGTCATCAGGGGAACTACTTTACTGAGTTCAGAAGTACAAAAGCTGGCAAGTGCTTTATTAAACCAGAAGTGTCCTCTCACATGGCAGAGCAGGTGGGAAGGTCCTGAGGATCCTCTCCAGTACCTTCGTGGCCTCGTAGCCAGAACCCTTGCAATTCAGAATTGGGTAGAGAAAGCTGAAAAGCAAGTTCTTCTCGCTGATACACTTGACCTATCTGAGCTCTTCCATCCGGACACATTCCTTAATGCTCTTCGCCAGGAAACTGCAAGGGCAACAGGCTGCTCTGTGGATAGTCTTAAATTTGTAGCATCCTGGAAAGGCCGACTTCAAGAAGCAAAGCTGCAAATTAAGATCAGTGGCCTGTTACTGGAAGGGTGCAGTTTTGATGGCAATCGCCTTTCAGAGAACCAGCATGATTCTCCTAGCGTATCGTCAGTTCTTCCTTGCTACATGGGCTGGACTCCACAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGGTGCAGTTTTGATGGCAA
59.61
TCAATGACATGGTACCCGGC
60.11
158
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGGGTGCAGTTTTGATGGCA
60.47
TCAATGACATGGTACCCGGC
60.11
159
PCR template sequence:
GGAAGGGTGCAGTTTTGATGGCAATCGCCTTTCAGAGAACCAGCATGATTCTCCTAGCGTATCGTCAGTTCTTCCTTGCTACATGGGCTGGACTCCACAAGGTTGGACCAAGTTTTATGAGTTTTCCTTATCAGATCTTCGGGCCGGGTACCATGTCATTGACAGGCTCTTCGATGGTACCAAAGATGTACAGTGGGAAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
10
Interacting miRNAs (#binding sites)
mmu-miR-26b-5p(2), mmu-miR-9-5p(1), mmu-miR-26a-5p(1), mmu-miR-185-5p(1), mmu-miR-29b-1-5p(1), mmu-miR-362-5p(1), mmu-miR-666-5p(1), mmu-miR-27a-5p(1), mmu-miR-802-5p(1), mmu-miR-542-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CTGGACTCCACAAGGTTGGACCAAGT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCDYNC2H1_1116_ORF_1
0.708
0.071253134
0.999939535
1857
ORF sequence:
ATGATCAGCTCTCAGGTCATCTCCCAGCTCAGGATCTTGGGAAGATCGGTCACAGCCGGTTGCAAATTTGACAGAGAAATCTGGTCTAATGAACTTTCTCCAGTTCTGAATCTTTGGAAAAAGCTGAACCAGAATTCAAACCTAATTCATCAAAAAGTATCACCACCTAATGATCGACAAGGATCTCCAATATTATCGTTCATCATTCTTGAGCAGTTCAATGCCATCCGCTTGGTACAAAGTGTTCATCAGTCGCTTGCTGCCCTCAGCAAAGTCATCAGGGGAACTACTTTACTGAGTTCAGAAGTACAAAAGCTGGCAAGTGCTTTATTAAACCAGAAGTGTCCTCTCACATGGCAGAGCAGGTGGGAAGGTCCTGAGGATCCTCTCCAGTACCTTCGTGGCCTCGTAGCCAGAACCCTTGCAATTCAGAATTGGGTAGAGAAAGCTGAAAAGCAAGTTCTTCTCGCTGATACACTTGACCTATCTGAGCTCTTCCATCCGGACACATTCCTTAATGCTCTTCGCCAGGAAACTGCAAGGGCAACAGGCTGCTCTGTGGATAGTCTTAAATTTGTAGCATCCTGGAAAGGCCGACTTCAAGAAGCAAAGCTGCAAATTAAGATCAGTGGCCTGTTACTGGAAGGGTGCAGTTTTGATGGCAATCGCCTTTCAGAGAACCAGCATGATTCTCCTAGCGTATCGTCAGTTCTTCCTTGCTACATGGGCTGGACTCCACAAGGTTGGACCAAGTTTTATGAGTTTTCCTTATCAGATCTTCGGGCCGGGTACCATGTCATTGACAGGCTCTTCGATGGTACCAAAGATGTACAGTGGGAATTTGTACACGGCTTACTTGAAAATTCTATTTATGGAGGACGTGTAGATAACTATTTTGATCTTAGAGTTCTTCAGTCCTACTTGAAGCAGTTTTTTAATTCTTCAATAATTGATGTACTAAACCAAAGGAACAAGAAAAGCATTTTTCCATATTCCATCTCTCTCCCAAACTCGTGCAGCATTTTGGACTACCGTGCTGTCATCGAGAAGCTCCCCGAGGACGATAAGCCCAGCTTCTTCGGTCTGCCCGCCAACATTGCCCGCTCCTCTCAGCGCATGATCAGCTCTCAGGTCATCTCCCAGCTCAGGATCTTGGGAAGATCGGTCACAGCCGGTTGCAAATTTGACAGAGAAATCTGGTCTAATGAACTTTCTCCAGTTCTGAATCTTTGGAAAAAGCTGAACCAGAATTCAAACCTAATTCATCAAAAAGTATCACCACCTAATGATCGACAAGGATCTCCAATATTATCGTTCATCATTCTTGAGCAGTTCAATGCCATCCGCTTGGTACAAAGTGTTCATCAGTCGCTTGCTGCCCTCAGCAAAGTCATCAGGGGAACTACTTTACTGAGTTCAGAAGTACAAAAGCTGGCAAGTGCTTTATTAAACCAGAAGTGTCCTCTCACATGGCAGAGCAGGTGGGAAGGTCCTGAGGATCCTCTCCAGTACCTTCGTGGCCTCGTAGCCAGAACCCTTGCAATTCAGAATTGGGTAGAGAAAGCTGAAAAGCAAGTTCTTCTCGCTGATACACTTGACCTATCTGAGCTCTTCCATCCGGACACATTCCTTAATGCTCTTCGCCAGGAAACTGCAAGGGCAACAGGCTGCTCTGTGGATAGTCTTAAATTTGTAGCATCCTGGAAAGGCCGACTTCAAGAAGCAAAGCTGCAAATTAAGATCAGTGGCCTGTTACTGGAAGGGTGCAGTTTTGATGGCAATCGCCTTTCAGAGAACCAGCATGATTCTCCTAGCGTATCGTCAGTTCTTCCTTGCTACATGGGCTGGACTCCACAA
Peptide sequence:
MISSQVISQLRILGRSVTAGCKFDREIWSNELSPVLNLWKKLNQNSNLIHQKVSPPNDRQGSPILSFIILEQFNAIRLVQSVHQSLAALSKVIRGTTLLSSEVQKLASALLNQKCPLTWQSRWEGPEDPLQYLRGLVARTLAIQNWVEKAEKQVLLADTLDLSELFHPDTFLNALRQETARATGCSVDSLKFVASWKGRLQEAKLQIKISGLLLEGCSFDGNRLSENQHDSPSVSSVLPCYMGWTPQGWTKFYEFSLSDLRAGYHVIDRLFDGTKDVQWEFVHGLLENSIYGGRVDNYFDLRVLQSYLKQFFNSSIIDVLNQRNKKSIFPYSISLPNSCSILDYRAVIEKLPEDDKPSFFGLPANIARSSQRMISSQVISQLRILGRSVTAGCKFDREIWSNELSPVLNLWKKLNQNSNLIHQKVSPPNDRQGSPILSFIILEQFNAIRLVQSVHQSLAALSKVIRGTTLLSSEVQKLASALLNQKCPLTWQSRWEGPEDPLQYLRGLVARTLAIQNWVEKAEKQVLLADTLDLSELFHPDTFLNALRQETARATGCSVDSLKFVASWKGRLQEAKLQIKISGLLLEGCSFDGNRLSENQHDSPSVSSVLPCYMGWTPQ
IRESfinder result
IRESfinder score
0.71127187
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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