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mmu_circDtna_813
Basic information of circular RNA
PanCircBase ID:
mmu_circDtna_813
mm39_Chr. Position ID:
chr18|23754443|23780110|+
Gene name:
Dtna
Transcript:
ENSMUST00000115832.4
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
12,13,14,15,16,17,18
Exon/intron offsets:
0,580,3695,9945,21760,24810,25501
Genomic length:
25667
Exon/intron sizes in nt:
88,98,11,49,71,60,90,100
Flanking exon/introns:
chr18:23735731-23754443|chr18:23780110-23784572
Splice length:
813
Other database IDs:
circAtlas: mmu-Dtna_0028
Human Ortholog IDs:
Mature spliced Sequence:
TATGCTTGAGAGTTCAAACCGGCTTGATGAAGAACACAGGCTGATCGCCAGGTACGCCGCACGACTGGCAGCAGAATCCTCCTCATCACAGCCCACACAGCAGAGGAGTGCCCCTGACATCTCCTTCACCATCGATGCAAATAAACAGCAAAGGCAGCTGATTGCAGAGCTAGAGAACAAGAACAGAGAAATCTTACAAGAGATTCAGAGACTTCGGGTAGAACATGAGCAAGCTTCCCAGCCCACGCCAGAGAAAGCTCAGCAGAACCCAACCTTGCTGGCAGAACTCCGGCTCCTCAGACAGCGAAAGGATGAGCTAGAACAGAGAATGTCTGCTCTCCAGGAGAGCCGGAGAGAGCTGATGGTCCAGTTGGAAGGTCTCATGAAGCTCCTGAAGACCCAGGGGGCAAGCTCCCCACGCTCTTCCCCCAGCCACACCATCAGCAGGCCGATCCCCATGCCCATCCGTTCAGCATCTGCCTGTCCCACACCAACGCACACCCCGCAGGACTCCCTCACTGGGGTAGGCGGAGATGTGCAAGAGGCGTTTGCACAAAGTTCGAGAAGGAATCTAAGGAGTGACCTGCTGGTGGCTGCAGACTCCATCACCAATACCATGTCCTCTCTGGTGAAGGAGCTGAATTCAGAGGTGGCGAGTGAAACAGAAAGTACTGTGGATTCCGAGTTCTCGAGACCTCAGTTTGAGGATCTGGCTCCATCACCGACCTCTGAGAAGGCTTTTCTAGCCCAAATCCACTCCCGGAAACCTGGGTACATTCACGGTGGAGCTGCAAGTACCACGCATGGTGACAT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCCAAATCCACTCCCGGAAA
59.96
GAGGAGGATTCTGCTGCCAG
60.18
151
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CTAGCCCAAATCCACTCCCG
60.18
GAGGAGGATTCTGCTGCCAG
60.18
155
PCR template sequence:
CTCCATCACCGACCTCTGAGAAGGCTTTTCTAGCCCAAATCCACTCCCGGAAACCTGGGTACATTCACGGTGGAGCTGCAAGTACCACGCATGGTGACATTATGCTTGAGAGTTCAAACCGGCTTGATGAAGAACACAGGCTGATCGCCAGGTACGCCGCACGACTGGCAGCAGAATCCTCCTCATCACAGCCCACACAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-19b-3p(1), mmu-miR-146a-5p(1), mmu-miR-19a-3p(1), mmu-miR-370-3p(1), mmu-miR-146b-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CGCATGGTGACATTATGCTTGAGAGT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCDTNA_813_ORF_1
1.0043
0.318366371
0.999932295
1623
ORF sequence:
ATGCTTGAGAGTTCAAACCGGCTTGATGAAGAACACAGGCTGATCGCCAGGTACGCCGCACGACTGGCAGCAGAATCCTCCTCATCACAGCCCACACAGCAGAGGAGTGCCCCTGACATCTCCTTCACCATCGATGCAAATAAACAGCAAAGGCAGCTGATTGCAGAGCTAGAGAACAAGAACAGAGAAATCTTACAAGAGATTCAGAGACTTCGGGTAGAACATGAGCAAGCTTCCCAGCCCACGCCAGAGAAAGCTCAGCAGAACCCAACCTTGCTGGCAGAACTCCGGCTCCTCAGACAGCGAAAGGATGAGCTAGAACAGAGAATGTCTGCTCTCCAGGAGAGCCGGAGAGAGCTGATGGTCCAGTTGGAAGGTCTCATGAAGCTCCTGAAGACCCAGGGGGCAAGCTCCCCACGCTCTTCCCCCAGCCACACCATCAGCAGGCCGATCCCCATGCCCATCCGTTCAGCATCTGCCTGTCCCACACCAACGCACACCCCGCAGGACTCCCTCACTGGGGTAGGCGGAGATGTGCAAGAGGCGTTTGCACAAAGTTCGAGAAGGAATCTAAGGAGTGACCTGCTGGTGGCTGCAGACTCCATCACCAATACCATGTCCTCTCTGGTGAAGGAGCTGAATTCAGAGGTGGCGAGTGAAACAGAAAGTACTGTGGATTCCGAGTTCTCGAGACCTCAGTTTGAGGATCTGGCTCCATCACCGACCTCTGAGAAGGCTTTTCTAGCCCAAATCCACTCCCGGAAACCTGGGTACATTCACGGTGGAGCTGCAAGTACCACGCATGGTGACATTATGCTTGAGAGTTCAAACCGGCTTGATGAAGAACACAGGCTGATCGCCAGGTACGCCGCACGACTGGCAGCAGAATCCTCCTCATCACAGCCCACACAGCAGAGGAGTGCCCCTGACATCTCCTTCACCATCGATGCAAATAAACAGCAAAGGCAGCTGATTGCAGAGCTAGAGAACAAGAACAGAGAAATCTTACAAGAGATTCAGAGACTTCGGGTAGAACATGAGCAAGCTTCCCAGCCCACGCCAGAGAAAGCTCAGCAGAACCCAACCTTGCTGGCAGAACTCCGGCTCCTCAGACAGCGAAAGGATGAGCTAGAACAGAGAATGTCTGCTCTCCAGGAGAGCCGGAGAGAGCTGATGGTCCAGTTGGAAGGTCTCATGAAGCTCCTGAAGACCCAGGGGGCAAGCTCCCCACGCTCTTCCCCCAGCCACACCATCAGCAGGCCGATCCCCATGCCCATCCGTTCAGCATCTGCCTGTCCCACACCAACGCACACCCCGCAGGACTCCCTCACTGGGGTAGGCGGAGATGTGCAAGAGGCGTTTGCACAAAGTTCGAGAAGGAATCTAAGGAGTGACCTGCTGGTGGCTGCAGACTCCATCACCAATACCATGTCCTCTCTGGTGAAGGAGCTGAATTCAGAGGTGGCGAGTGAAACAGAAAGTACTGTGGATTCCGAGTTCTCGAGACCTCAGTTTGAGGATCTGGCTCCATCACCGACCTCTGAGAAGGCTTTTCTAGCCCAAATCCACTCCCGGAAACCTGGGTACATTCACGGTGGAGCTGCAAGTACCACGCATGGTGAC
Peptide sequence:
MLESSNRLDEEHRLIARYAARLAAESSSSQPTQQRSAPDISFTIDANKQQRQLIAELENKNREILQEIQRLRVEHEQASQPTPEKAQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQLEGLMKLLKTQGASSPRSSPSHTISRPIPMPIRSASACPTPTHTPQDSLTGVGGDVQEAFAQSSRRNLRSDLLVAADSITNTMSSLVKELNSEVASETESTVDSEFSRPQFEDLAPSPTSEKAFLAQIHSRKPGYIHGGAASTTHGDIMLESSNRLDEEHRLIARYAARLAAESSSSQPTQQRSAPDISFTIDANKQQRQLIAELENKNREILQEIQRLRVEHEQASQPTPEKAQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQLEGLMKLLKTQGASSPRSSPSHTISRPIPMPIRSASACPTPTHTPQDSLTGVGGDVQEAFAQSSRRNLRSDLLVAADSITNTMSSLVKELNSEVASETESTVDSEFSRPQFEDLAPSPTSEKAFLAQIHSRKPGYIHGGAASTTHGD
IRESfinder result
IRESfinder score
0.367824405
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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