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mmu_circDst_1204
Basic information of circular RNA
PanCircBase ID:
mmu_circDst_1204
mm39_Chr. Position ID:
chr1|34251302|34258606|+
Gene name:
Dst
Transcript:
ENSMUST00000183034.5
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
7
Exon/intron indexes:
51,52,53,54,55,56,57
Exon/intron offsets:
0,680,2312,3264,5588,6113,7174
Genomic length:
7304
Exon/intron sizes in nt:
3,18,16,71,57,12,76,32,00,000
Flanking exon/introns:
chr1:34250443-34251302|chr1:34258606-34262884
Splice length:
1204
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
ATGCTGGAGCAGGATATTACGGGTCGTCAAAGCAGCATAAATGCCATGAACGAAAAGGTGAAGACATTTATAGAGACGACAGACCCGTCCACAGCCTCCTCCCTGCAAGCGAAAATGAAGGATCTGTCTGCTCGCTTTTCCGAAGCAAGTCAGAAACACAAGGAAAAGCTAGCCAAGATGGTGGAGCTAAAGGCCAAAGTAGAGCAGTTTGAGAAGCTCTCAGACAAGCTCCAGACGTTTCTAGAGACACAGAGCCAGGCGCTCACCGAGGTGGCCATGCCAGGAAAGGATGTTCCGGAGCTGTCTCAGCATATGCAGGAATCAACTGCTAAATTCTTAGAACACAGGAAAGATCTCGAAGCTTTGCACAGCCTCCTGAAAGAGATATCCAGCCATGGCTTACCAGGGGACAAAGCTCTGGTGTTTGAGAAAACTAATAACTTGTCAAGGAAATTCAAAGAAATGGAGGATACTATCCAAGAAAAGAAAGACGCTCTAAGTTCTTGTCAGGAGCAGCTGAGTGCTTTTCAAACCCTCGCTCAGTCACTGAAAACATGGATAAAAGAGACAACCAAGCAGGTTCCCGTTGTGAAGCCTTCTCTTGGCACAGAGGACTTGAGAAAATCTCTGGAAGAAACCAAGAAATTACAAGAAAAGTGGAATCTGAAAGCACCAGAAATTCACAAAGCAAACAACAGTGGTGTCTCACTATGTAACCTGCTGAGTGCATTGATCAGCCCTGCAAAGGCCATAGCCGCAGCCAAATCAGGTGGAGTAATACTAAATGGTGAAGGAACAGACACAAATACTCAGGATTTCTTGGCAAATAAAGGTTTAACATCTATTAAGAAGGACATGACTGACATAAGCCACAGTTACGAAGACCTGGGCCTCTTACTCAAGGATAAAATAGTTGAACTGAACACTAAGCTCTCCAAATTGCAAAAGGCTCAGGAAGAGTCCAGTGCAATGATGCAGTGGTTAGAGAAGATGAACAAGACGGCCAGCAGGTGGCGCCAGACACCTACACCTGCAGACACTGAGTCTGTGAAGTTGCAGGTGGAGCAGAACAAGTCATTTGAGGCAGAACTGAAGCAAAATGTAAACAAAGTGCAAGAATTAAAAGACAAACTATCAGAGCTTCTGGAAGAGAACCCAGAGGCTCCCGAGGCCCAGTCCTGGAAGCAGGCACTGGCAGAGATGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGAAGAGAACCCAGAGGCT
60.18
GCTGTGGACGGGTCTGTC
60.05
155
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGGAAGAGAACCCAGAGGCT
60.18
CTGTGGACGGGTCTGTCG
59.74
154
PCR template sequence:
AACAAAGTGCAAGAATTAAAAGACAAACTATCAGAGCTTCTGGAAGAGAACCCAGAGGCTCCCGAGGCCCAGTCCTGGAAGCAGGCACTGGCAGAGATGGATGCTGGAGCAGGATATTACGGGTCGTCAAAGCAGCATAAATGCCATGAACGAAAAGGTGAAGACATTTATAGAGACGACAGACCCGTCCACAGCCTCCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
17
Interacting miRNAs (#binding sites)
mmu-miR-92a-3p(1), mmu-miR-19a-3p(1), mmu-miR-217-5p(1), mmu-miR-326-3p(1), mmu-miR-25-3p(1), mmu-miR-214-3p(1), mmu-miR-24-3p(1), mmu-miR-149-5p(1), mmu-miR-136-5p(1), mmu-miR-363-3p(1), mmu-miR-362-5p(1), mmu-miR-1198-5p(1), mmu-miR-5101(1), mmu-miR-697(1), mmu-miR-1904(1), mmu-miR-99a-5p(1), mmu-miR-339-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CTGGCAGAGATGGATGCTGGAGCAGG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCDST_1204_ORF_1
0.9662
0.218260779
0.999503828
1416
ORF sequence:
ATGCTGGAGCAGGATATTACGGGTCGTCAAAGCAGCATAAATGCCATGAACGAAAAGGTGAAGACATTTATAGAGACGACAGACCCGTCCACAGCCTCCTCCCTGCAAGCGAAAATGAAGGATCTGTCTGCTCGCTTTTCCGAAGCAAGTCAGAAACACAAGGAAAAGCTAGCCAAGATGGTGGAGCTAAAGGCCAAAGTAGAGCAGTTTGAGAAGCTCTCAGACAAGCTCCAGACGTTTCTAGAGACACAGAGCCAGGCGCTCACCGAGGTGGCCATGCCAGGAAAGGATGTTCCGGAGCTGTCTCAGCATATGCAGGAATCAACTGCTAAATTCTTAGAACACAGGAAAGATCTCGAAGCTTTGCACAGCCTCCTGAAAGAGATATCCAGCCATGGCTTACCAGGGGACAAAGCTCTGGTGTTTGAGAAAACTAATAACTTGTCAAGGAAATTCAAAGAAATGGAGGATACTATCCAAGAAAAGAAAGACGCTCTAAGTTCTTGTCAGGAGCAGCTGAGTGCTTTTCAAACCCTCGCTCAGTCACTGAAAACATGGATAAAAGAGACAACCAAGCAGGTTCCCGTTGTGAAGCCTTCTCTTGGCACAGAGGACTTGAGAAAATCTCTGGAAGAAACCAAGAAATTACAAGAAAAGTGGAATCTGAAAGCACCAGAAATTCACAAAGCAAACAACAGTGGTGTCTCACTATGTAACCTGCTGAGTGCATTGATCAGCCCTGCAAAGGCCATAGCCGCAGCCAAATCAGGTGGAGTAATACTAAATGGTGAAGGAACAGACACAAATACTCAGGATTTCTTGGCAAATAAAGGTTTAACATCTATTAAGAAGGACATGACTGACATAAGCCACAGTTACGAAGACCTGGGCCTCTTACTCAAGGATAAAATAGTTGAACTGAACACTAAGCTCTCCAAATTGCAAAAGGCTCAGGAAGAGTCCAGTGCAATGATGCAGTGGTTAGAGAAGATGAACAAGACGGCCAGCAGGTGGCGCCAGACACCTACACCTGCAGACACTGAGTCTGTGAAGTTGCAGGTGGAGCAGAACAAGTCATTTGAGGCAGAACTGAAGCAAAATGTAAACAAAGTGCAAGAATTAAAAGACAAACTATCAGAGCTTCTGGAAGAGAACCCAGAGGCTCCCGAGGCCCAGTCCTGGAAGCAGGCACTGGCAGAGATGGATGCTGGAGCAGGATATTACGGGTCGTCAAAGCAGCATAAATGCCATGAACGAAAAGGTGAAGACATTTATAGAGACGACAGACCCGTCCACAGCCTCCTCCCTGCAAGCGAAAATGAAGGATCTGTCTGCTCGCTTTTCCGAAGCAAGTCAGAAACACAAGGAAAAGCTAGCCAAGATGGTGGAGCTAAAGGCCAAAGTAGAGCAGTTTGA
Peptide sequence:
MLEQDITGRQSSINAMNEKVKTFIETTDPSTASSLQAKMKDLSARFSEASQKHKEKLAKMVELKAKVEQFEKLSDKLQTFLETQSQALTEVAMPGKDVPELSQHMQESTAKFLEHRKDLEALHSLLKEISSHGLPGDKALVFEKTNNLSRKFKEMEDTIQEKKDALSSCQEQLSAFQTLAQSLKTWIKETTKQVPVVKPSLGTEDLRKSLEETKKLQEKWNLKAPEIHKANNSGVSLCNLLSALISPAKAIAAAKSGGVILNGEGTDTNTQDFLANKGLTSIKKDMTDISHSYEDLGLLLKDKIVELNTKLSKLQKAQEESSAMMQWLEKMNKTASRWRQTPTPADTESVKLQVEQNKSFEAELKQNVNKVQELKDKLSELLEENPEAPEAQSWKQALAEMDAGAGYYGSSKQHKCHERKGEDIYRDDRPVHSLLPASENEGSVCSLFRSKSETQGKASQDGGAKGQSRAV
IRESfinder result
IRESfinder score
0.451406147
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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