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mmu_circDpp6_248
Basic information of circular RNA
PanCircBase ID:
mmu_circDpp6_248
mm39_Chr. Position ID:
chr5|27866584|27869758|+
Gene name:
Dpp6
Transcript:
ENSMUST00000071500.13
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
3
Exon/intron indexes:
13,14,15
Exon/intron offsets:
0,1843,3126
Genomic length:
3174
Exon/intron sizes in nt:
108,92,48
Flanking exon/introns:
chr5:27858736-27866584|chr5:27869758-27871407
Splice length:
248
Other database IDs:
CIRCpedia: MMU_CIRCpedia_15008, circAtlas: mmu-Dpp6_0024
Human Ortholog IDs:
Mature spliced Sequence:
AATGAAGAGCCTGTGTTCTCCAAAGATGGCAGGAAGTTTTTCTTTGTCAGAGCGATCCCACAGGGAGGCCGGGGTAAATTCTACCATATCACCGTATCATCATCCCAGCCCAACAGCAGCAATGACAACATCCAGTCTATCACCTCTGGAGACTGGGATGTGACCAAGATCCTGTCCTATGATGAGAAGCGGAATAAGATCTATTTCCTGAGCACAGAAGACCTGCCACGGAGACGACATCTCTACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGGATGTGACCAAGATCCTG
59.44
CTGTGGGATCGCTCTGACAA
59.75
158
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGGATGTGACCAAGATCCTGT
59.44
CTGTGGGATCGCTCTGACAA
59.75
157
PCR template sequence:
GAGACTGGGATGTGACCAAGATCCTGTCCTATGATGAGAAGCGGAATAAGATCTATTTCCTGAGCACAGAAGACCTGCCACGGAGACGACATCTCTACAGAATGAAGAGCCTGTGTTCTCCAAAGATGGCAGGAAGTTTTTCTTTGTCAGAGCGATCCCACAGGGAGGCCGGGGTAAATTCTACCATATCACCGTATCAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
GACATCTCTACAGAATGAAGAGCCTG
siRNA sets
TTCATTCTGTAGAGATGTC, CTTCATTCTGTAGAGATGT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.577436218
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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