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mmu_circDpp6_170
Basic information of circular RNA
PanCircBase ID:
mmu_circDpp6_170
mm39_Chr. Position ID:
chr5|27656185|27674483|+
Gene name:
Dpp6
Transcript:
ENSMUST00000071500.13
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
4,5
Exon/intron offsets:
0,18223
Genomic length:
18298
Exon/intron sizes in nt:
95,75
Flanking exon/introns:
chr5:27604010-27656185|chr5:27674483-27742979
Splice length:
170
Other database IDs:
circAtlas: mmu-Dpp6_0070
Human Ortholog IDs:
Mature spliced Sequence:
ATAAGGAATTCATCTACAGAGAACGGAAAGGGAGTGTCATACTGCGGAATGTTGAAACAAATAATTCCACGGTGTTAATAGAAGGCAAAAAAATTGAATCCTTGAGAGCCATCAGATATGAAATATCCCCAGATAAAGAGTATGTGCTGTTCTCCTATAATGTGGAGCCG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGAATCCTTGAGAGCCATCAGA
58.89
TCCGCAGTATGACACTCCCT
60.32
124
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGAATCCTTGAGAGCCATCAGA
58.89
TTCCGCAGTATGACACTCCC
59.46
125
PCR template sequence:
CAAAAAAATTGAATCCTTGAGAGCCATCAGATATGAAATATCCCCAGATAAAGAGTATGTGCTGTTCTCCTATAATGTGGAGCCGATAAGGAATTCATCTACAGAGAACGGAAAGGGAGTGTCATACTGCGGAATGTTGAAACAAATAATTCCACGGTGTTAATAGAAGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-15a-5p(1), mmu-miR-211-5p(1), mmu-miR-204-5p(1), mmu-miR-15b-5p(1), mmu-miR-425-5p(1), mmu-miR-129-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TAATGTGGAGCCGATAAGGAATTCAT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.535232793
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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