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mmu_circDpp10_516
Basic information of circular RNA
PanCircBase ID:
mmu_circDpp10_516
mm39_Chr. Position ID:
chr1|123413622|123832903|-
Gene name:
Dpp10
Transcript:
ENSMUST00000112606.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
6
Exon/intron indexes:
7,6,5,4,3,2
Exon/intron offsets:
0,179,164394,200327,368272,419166
Genomic length:
419281
Exon/intron sizes in nt:
82,53,75,95,96,115
Flanking exon/introns:
chr1:123373050-123413622|chr1:123832903-123973108
Splice length:
516
Other database IDs:
CIRCpedia: MMU_CIRCpedia_6101
CIRCpedia: HSA_CIRCpedia_122558
Human Ortholog IDs:
Mature spliced Sequence:
GAACTAGGAAGTAACAGCCCTCCACAAAGAAACTGGAAGGGAATCGCCATTGCCCTGCTGGTGATCTTGGTGGTATGCTCACTCATCACAATGTCTGTCATCCTGTTAACACCAGATGAACTAACAAATTCTTCAGAAACAAGACTGTCACTAGAGGAGCTTTTGGGGAAAGGATTCGGACTTCATAATCCAGAACCTCGGTGGATCAATGATACAGTCGTGGTATATAAAACCAACAATGGACACGTCATGAAACTGAATACAGAATCAAATGCTTCCACATTGTTATTGGACAACTCAACTTTTGTAACGTTTAAAGCCTCCAGACACTCACTTTCCCCAGATTTAAAGTATGTTCTCCTGGCATACGACGTTAAGCAGATTTTTCATTACTCATTTACCGCTTCATATTTGATTTACAACATACACACTGGGGAAGTGTGGGAGTTGAATCCCCCAGAAGTTGAGGACTCAGTGTTGCAGTATGCGGCCTGGGGTGTGCAAGGACAGCAGCTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CTGGGGAAGTGTGGGAGTTG
60.25
ACCACCAAGATCACCAGCAG
59.96
160
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGGGAAGTGTGGGAGTTGAA
59.52
ACCACCAAGATCACCAGCAG
59.96
158
PCR template sequence:
TTACAACATACACACTGGGGAAGTGTGGGAGTTGAATCCCCCAGAAGTTGAGGACTCAGTGTTGCAGTATGCGGCCTGGGGTGTGCAAGGACAGCAGCTGGAACTAGGAAGTAACAGCCCTCCACAAAGAAACTGGAAGGGAATCGCCATTGCCCTGCTGGTGATCTTGGTGGTATGCTCACTCATCACAATGTCTGTCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-574-5p(1)
siRNAs for circular RNA silencing
Junction sequence
AGGACAGCAGCTGGAACTAGGAAGTA
siRNA sets
ACTTCCTAGTTCCAGCTGC, CTTCCTAGTTCCAGCTGCT, TACTTCCTAGTTCCAGCTG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCDPP10_516_ORF_1
0.8435
0.05558545
0.965323839
942
ORF sequence:
ATGTCTGTCATCCTGTTAACACCAGATGAACTAACAAATTCTTCAGAAACAAGACTGTCACTAGAGGAGCTTTTGGGGAAAGGATTCGGACTTCATAATCCAGAACCTCGGTGGATCAATGATACAGTCGTGGTATATAAAACCAACAATGGACACGTCATGAAACTGAATACAGAATCAAATGCTTCCACATTGTTATTGGACAACTCAACTTTTGTAACGTTTAAAGCCTCCAGACACTCACTTTCCCCAGATTTAAAGTATGTTCTCCTGGCATACGACGTTAAGCAGATTTTTCATTACTCATTTACCGCTTCATATTTGATTTACAACATACACACTGGGGAAGTGTGGGAGTTGAATCCCCCAGAAGTTGAGGACTCAGTGTTGCAGTATGCGGCCTGGGGTGTGCAAGGACAGCAGCTGGAACTAGGAAGTAACAGCCCTCCACAAAGAAACTGGAAGGGAATCGCCATTGCCCTGCTGGTGATCTTGGTGGTATGCTCACTCATCACAATGTCTGTCATCCTGTTAACACCAGATGAACTAACAAATTCTTCAGAAACAAGACTGTCACTAGAGGAGCTTTTGGGGAAAGGATTCGGACTTCATAATCCAGAACCTCGGTGGATCAATGATACAGTCGTGGTATATAAAACCAACAATGGACACGTCATGAAACTGAATACAGAATCAAATGCTTCCACATTGTTATTGGACAACTCAACTTTTGTAACGTTTAAAGCCTCCAGACACTCACTTTCCCCAGATTTAAAGTATGTTCTCCTGGCATACGACGTTAAGCAGATTTTTCATTACTCATTTACCGCTTCATATTTGATTTACAACATACACACTGGGGAAGTGTGGGAGTTGAATCCCCCAGAAGTTGAGGACTCAGTGTTGCAGTATGCGGCCTGGGGTGTGCAAGGACAGCAGCTG
Peptide sequence:
MSVILLTPDELTNSSETRLSLEELLGKGFGLHNPEPRWINDTVVVYKTNNGHVMKLNTESNASTLLLDNSTFVTFKASRHSLSPDLKYVLLAYDVKQIFHYSFTASYLIYNIHTGEVWELNPPEVEDSVLQYAAWGVQGQQLELGSNSPPQRNWKGIAIALLVILVVCSLITMSVILLTPDELTNSSETRLSLEELLGKGFGLHNPEPRWINDTVVVYKTNNGHVMKLNTESNASTLLLDNSTFVTFKASRHSLSPDLKYVLLAYDVKQIFHYSFTASYLIYNIHTGEVWELNPPEVEDSVLQYAAWGVQGQQL
IRESfinder result
IRESfinder score
0.676431043
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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