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mmu_circDpp10_1035
Basic information of circular RNA
PanCircBase ID:
mmu_circDpp10_1035
mm39_Chr. Position ID:
chr1|123264552|123312742|-
Gene name:
Dpp10
Transcript:
ENSMUST00000112606.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
12
Exon/intron indexes:
25,24,23,22,21,20,19,18,17,16,15,14
Exon/intron offsets:
0,4281,4496,4793,15810,16588,30774,30951,39803,41303,47461,48098
Genomic length:
48190
Exon/intron sizes in nt:
74,73,59,100,55,195,70,99,48,122,48,92
Flanking exon/introns:
chr1:123262112-123264552|chr1:123312742-123326249
Splice length:
1035
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
AGTAAAAGCGAGCAAATTACGGTGCGGCATCTGACATCAGGAAACTGGGAAGTGATAAGGATCTTGGCCTATGATGAAACAACTCAAAAAATTTACTTTCTGAGCACAGAATCTTCTCCCCAAGGGAGGCAACTATACAGTGCTTCTACTGAGGGACTATTGAATCGTGATTGCATCTCATGCAACTTTATGAAAGAAGATTGCACGTATTTTGATGCCAGCTTTAGCCCCATGAATCAACATTTCTTGTTATTCTGTGAAGGTCCAAAGGTCCCAGTGGTCAGCCTTCACATCACAGACAACCCATCAAGGTATTTCCTCTTGGAAAACAATTCTGTGATGAAAGAAACTATTCAGAAGAAGAAGCTCGCAAAGAGAGAGACTAGAATACTTCACATTGATGACTATGAACTTCCTTTACAGTTGTCCTTTCCCAAAGATTTTATGGAGAAAAACCAGTATGCTCTTCTATTAATAATGGATGAAGAACCAGGAGGCCAAATGGTGACAGATAAGTTCCATGTTGACTGGGATTCAGTTCTTATTGACACCGATAATGTCATTGTAGCAAGATTTGATGGCAGAGGAAGTGGATTCCAGGGCCTGAAAGTTTTGCAGGAGATTCACAGAAGGATAGGCTCAGTGGAGGCAAAGGACCAAGTAGCTGCTGTAAAATATTTACTGAAACAGCCATATATTGACTCCAAAAGATTAAGCATTTTTGGAAAGGGATATGGGGGCTATATTGCATCAATGATCTTAAAATCAGATGAGAAGTTTTTCAAATGTGGAGCCGTGGTTGCACCCATCTCAGACATGAAGTTGTATGCCTCAGCTTTCTCTGAACGGTACCTTGGCATGCCATCAAAGGAAGAAAGCACTTACCAGGCATCCAGTGTACTGCATAACATTCATGGTTTAAAAGAAGAAAATTTATTAATAATTCACGGAACTGCTGATACAAAAGTTCATTTCCAGCATTCAGCAGAATTGATCAAGCATCTGATAAAAGCTGGGGTGAATTACACTCTGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCACGGAACTGCTGATACAA
56.88
TCCCAGTTTCCTGATGTCAGA
58.38
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TTCACGGAACTGCTGATACA
56.88
TCCCAGTTTCCTGATGTCAGA
58.38
142
PCR template sequence:
ATTAATAATTCACGGAACTGCTGATACAAAAGTTCATTTCCAGCATTCAGCAGAATTGATCAAGCATCTGATAAAAGCTGGGGTGAATTACACTCTGCAGAGTAAAAGCGAGCAAATTACGGTGCGGCATCTGACATCAGGAAACTGGGAAGTGATAAGGATCTTGGCCTATGATGAAACAACTCAAAAAATTTACTTTC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-146a-5p(1), mmu-miR-320-3p(1), mmu-miR-1199-5p(1), mmu-miR-146b-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TTACACTCTGCAGAGTAAAAGCGAGC
siRNA sets
TCGCTTTTACTCTGCAGAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCDPP10_1035_ORF_1
0.7544
0.056847732
0.999950711
1881
ORF sequence:
ATGAAAGAAGATTGCACGTATTTTGATGCCAGCTTTAGCCCCATGAATCAACATTTCTTGTTATTCTGTGAAGGTCCAAAGGTCCCAGTGGTCAGCCTTCACATCACAGACAACCCATCAAGGTATTTCCTCTTGGAAAACAATTCTGTGATGAAAGAAACTATTCAGAAGAAGAAGCTCGCAAAGAGAGAGACTAGAATACTTCACATTGATGACTATGAACTTCCTTTACAGTTGTCCTTTCCCAAAGATTTTATGGAGAAAAACCAGTATGCTCTTCTATTAATAATGGATGAAGAACCAGGAGGCCAAATGGTGACAGATAAGTTCCATGTTGACTGGGATTCAGTTCTTATTGACACCGATAATGTCATTGTAGCAAGATTTGATGGCAGAGGAAGTGGATTCCAGGGCCTGAAAGTTTTGCAGGAGATTCACAGAAGGATAGGCTCAGTGGAGGCAAAGGACCAAGTAGCTGCTGTAAAATATTTACTGAAACAGCCATATATTGACTCCAAAAGATTAAGCATTTTTGGAAAGGGATATGGGGGCTATATTGCATCAATGATCTTAAAATCAGATGAGAAGTTTTTCAAATGTGGAGCCGTGGTTGCACCCATCTCAGACATGAAGTTGTATGCCTCAGCTTTCTCTGAACGGTACCTTGGCATGCCATCAAAGGAAGAAAGCACTTACCAGGCATCCAGTGTACTGCATAACATTCATGGTTTAAAAGAAGAAAATTTATTAATAATTCACGGAACTGCTGATACAAAAGTTCATTTCCAGCATTCAGCAGAATTGATCAAGCATCTGATAAAAGCTGGGGTGAATTACACTCTGCAGAGTAAAAGCGAGCAAATTACGGTGCGGCATCTGACATCAGGAAACTGGGAAGTGATAAGGATCTTGGCCTATGATGAAACAACTCAAAAAATTTACTTTCTGAGCACAGAATCTTCTCCCCAAGGGAGGCAACTATACAGTGCTTCTACTGAGGGACTATTGAATCGTGATTGCATCTCATGCAACTTTATGAAAGAAGATTGCACGTATTTTGATGCCAGCTTTAGCCCCATGAATCAACATTTCTTGTTATTCTGTGAAGGTCCAAAGGTCCCAGTGGTCAGCCTTCACATCACAGACAACCCATCAAGGTATTTCCTCTTGGAAAACAATTCTGTGATGAAAGAAACTATTCAGAAGAAGAAGCTCGCAAAGAGAGAGACTAGAATACTTCACATTGATGACTATGAACTTCCTTTACAGTTGTCCTTTCCCAAAGATTTTATGGAGAAAAACCAGTATGCTCTTCTATTAATAATGGATGAAGAACCAGGAGGCCAAATGGTGACAGATAAGTTCCATGTTGACTGGGATTCAGTTCTTATTGACACCGATAATGTCATTGTAGCAAGATTTGATGGCAGAGGAAGTGGATTCCAGGGCCTGAAAGTTTTGCAGGAGATTCACAGAAGGATAGGCTCAGTGGAGGCAAAGGACCAAGTAGCTGCTGTAAAATATTTACTGAAACAGCCATATATTGACTCCAAAAGATTAAGCATTTTTGGAAAGGGATATGGGGGCTATATTGCATCAATGATCTTAAAATCAGATGAGAAGTTTTTCAAATGTGGAGCCGTGGTTGCACCCATCTCAGACATGAAGTTGTATGCCTCAGCTTTCTCTGAACGGTACCTTGGCATGCCATCAAAGGAAGAAAGCACTTACCAGGCATCCAGTGTACTGCATAACATTCATGGTTTAAAAGAAGAAAATTTATTAATAATTCACGGAACTGCTGATACAAAAGTTCATTTCCAGCATTCAGCAGAATTGATCAAGCATCTGATAAAAGCTGGGGTGAATTACACTCTGCAG
Peptide sequence:
MKEDCTYFDASFSPMNQHFLLFCEGPKVPVVSLHITDNPSRYFLLENNSVMKETIQKKKLAKRETRILHIDDYELPLQLSFPKDFMEKNQYALLLIMDEEPGGQMVTDKFHVDWDSVLIDTDNVIVARFDGRGSGFQGLKVLQEIHRRIGSVEAKDQVAAVKYLLKQPYIDSKRLSIFGKGYGGYIASMILKSDEKFFKCGAVVAPISDMKLYASAFSERYLGMPSKEESTYQASSVLHNIHGLKEENLLIIHGTADTKVHFQHSAELIKHLIKAGVNYTLQSKSEQITVRHLTSGNWEVIRILAYDETTQKIYFLSTESSPQGRQLYSASTEGLLNRDCISCNFMKEDCTYFDASFSPMNQHFLLFCEGPKVPVVSLHITDNPSRYFLLENNSVMKETIQKKKLAKRETRILHIDDYELPLQLSFPKDFMEKNQYALLLIMDEEPGGQMVTDKFHVDWDSVLIDTDNVIVARFDGRGSGFQGLKVLQEIHRRIGSVEAKDQVAAVKYLLKQPYIDSKRLSIFGKGYGGYIASMILKSDEKFFKCGAVVAPISDMKLYASAFSERYLGMPSKEESTYQASSVLHNIHGLKEENLLIIHGTADTKVHFQHSAELIKHLIKAGVNYTLQ
IRESfinder result
IRESfinder score
0.671217111
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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