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mmu_circDock9_321
Basic information of circular RNA
PanCircBase ID:
mmu_circDock9_321
mm39_Chr. Position ID:
chr14|121876878|121877571|-
Gene name:
Dock9
Transcript:
ENSMUST00000212376.3
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
2
Exon/intron indexes:
13,12
Exon/intron offsets:
0,495
Genomic length:
693
Exon/intron sizes in nt:
1,23,198
Flanking exon/introns:
chr14:121872651-121876878|chr14:121877571-121878889
Splice length:
321
Other database IDs:
circAtlas: mmu-Dock9_0020
Human Ortholog IDs:
Mature spliced Sequence:
GTCGAGCCTTTCTTTGTCACCCTGTCCCTGTTCGACATAAAATACAACCGAAAGATTTCTGCTGACTTCCACGTGGACCTGAACCACTTCTCAGTGCGGCAGATGCTGACCCCCACGTCCCCAGCTCTGATGAATGGTGGCCAGAGCCCACCTGCCTTCCAGGATGCCCTTCATACAGCCATGCAGTATCCGAAGCAGGGAATATTTTCAGTCACGTGTCCTCACCCAGACATATTTCTTGTGGCCAGAATTGAGAAGGTCCTCCAAGGAAGCATCACGCACTGTGCTGAACCGTATATGAGAAGCTCAGACTCTTCTAAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CATCACGCACTGTGCTGAAC
60.11
CCGCACTGAGAAGTGGTTCA
60.25
148
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CAAGGAAGCATCACGCACTG
59.83
CCGCACTGAGAAGTGGTTCA
60.25
156
PCR template sequence:
TCACCCAGACATATTTCTTGTGGCCAGAATTGAGAAGGTCCTCCAAGGAAGCATCACGCACTGTGCTGAACCGTATATGAGAAGCTCAGACTCTTCTAAGGTCGAGCCTTTCTTTGTCACCCTGTCCCTGTTCGACATAAAATACAACCGAAAGATTTCTGCTGACTTCCACGTGGACCTGAACCACTTCTCAGTGCGGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
AGACTCTTCTAAGGTCGAGCCTTTCT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCDOCK9_321_ORF_1
0.9805
0.232879825
0.804429391
540
ORF sequence:
ATGCTGACCCCCACGTCCCCAGCTCTGATGAATGGTGGCCAGAGCCCACCTGCCTTCCAGGATGCCCTTCATACAGCCATGCAGTATCCGAAGCAGGGAATATTTTCAGTCACGTGTCCTCACCCAGACATATTTCTTGTGGCCAGAATTGAGAAGGTCCTCCAAGGAAGCATCACGCACTGTGCTGAACCGTATATGAGAAGCTCAGACTCTTCTAAGGTCGAGCCTTTCTTTGTCACCCTGTCCCTGTTCGACATAAAATACAACCGAAAGATTTCTGCTGACTTCCACGTGGACCTGAACCACTTCTCAGTGCGGCAGATGCTGACCCCCACGTCCCCAGCTCTGATGAATGGTGGCCAGAGCCCACCTGCCTTCCAGGATGCCCTTCATACAGCCATGCAGTATCCGAAGCAGGGAATATTTTCAGTCACGTGTCCTCACCCAGACATATTTCTTGTGGCCAGAATTGAGAAGGTCCTCCAAGGAAGCATCACGCACTGTGCTGAACCGTATATGAGAAGCTCAGACTCTTCTAAG
Peptide sequence:
MLTPTSPALMNGGQSPPAFQDALHTAMQYPKQGIFSVTCPHPDIFLVARIEKVLQGSITHCAEPYMRSSDSSKVEPFFVTLSLFDIKYNRKISADFHVDLNHFSVRQMLTPTSPALMNGGQSPPAFQDALHTAMQYPKQGIFSVTCPHPDIFLVARIEKVLQGSITHCAEPYMRSSDSSK
IRESfinder result
IRESfinder score
0.598104646
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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