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mmu_circDock9_1964
Basic information of circular RNA
PanCircBase ID:
mmu_circDock9_1964
mm39_Chr. Position ID:
chr14|121783377|121823754|-
Gene name:
Dock9
Transcript:
ENSMUST00000212376.3
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
15
Exon/intron indexes:
53,52,51,50,49,48,47,46,45,44,43,42,41,40,39
Exon/intron offsets:
0,590,4228,9150,13021,14429,14624,16089,29947,32189,34519,35366,37392,37696,40261
Genomic length:
40377
Exon/intron sizes in nt:
139,101,191,211,147,6,114,123,107,58,216,114,183,138,116
Flanking exon/introns:
chr14:121781995-121783377|chr14:121823754-121829223
Splice length:
1964
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GCTACGGCCACTCAGAGGCAGATGTCGTTCACCAGTCGCTTCTCGAAGCCAACATCGCTACTGAGGTCTGCCTCACAGCGCTGGACACCCTCTCTCTCTTCACACTGGCTTTTAAGAACCAGCTCCTAGCTGATCATGGGCATAATCCCCTCATGAAGAAAGTTTTTGACGTCTACCTGTGTTTCCTTCAAAAACACCAGTCAGAAATGGCTTTAAAAAACGTCTTTACTGCCTTAAGGTCTCTAATTTATAAGTTCCCCTCGGCGTTCTACGAGGGGCGGGCGGACATGTGTGCCTCCCTGTGCTATGAGGTCCTCAAGTGCTGCAACTCCAAGCTCAGTTCCATCCGGACGGAGGCCTCCCAGCTGCTCTACTTCCTGATGAGGAACAACTTCGACTACACAGGAAAGAAGTCTTTTGTTCGGACGCACTTACAGGTCATCATCTCTGTCAGCCAACTGATTGCAGATGTGGTTGGCATTGGAGGAACCAGATTCCAGCAGTCCTTGTCTATCATCAACAACTGTGCCAACAGCGACCGGATCATCAAGCACACCAGCTTTTCCTCTGATGTGAAAGATTTGACTAAGAGGATCCGCACAGTCCTGATGGCCACAGCCCAGATGAAGGAGCACGAGAACGACCCGGAGATGCTGGTGGACCTCCAGTACAGCCTGGCTAAGTCCTACGCCAGCACCCCTGAGCTCAGGAAGACGTGGCTAGACAGTATGGCGAGGATTCACGTTAAAAATGGGGACCTCTCAGAGGCGGCAATGTGCTATGTCCACGTGACAGCCTTGGTGGCAGAATATCTCACACGGAAAGGCATGTTCAGACAGGGGTGCACAGCCTTCAGGGTTATCACACCAAACATCGATGAAGAGGCTTCCATGATGGAAGACGTCGGCATGCAGGACGTCCATTTCAACGAGGATGTGCTGATGGAGCTGCTGGAGCAGTGTGCGGATGGACTTTGGAAGGCGGAGCGCTACGAGCTGATCGCTGACATCTATAAGCTCATCATCCCCATCTACGAAAAGCGGAGGGATTTCGAGAGACTAGCCCATCTGTATGACACGCTGCACCGCGCATACAGCAAAGTGACAGAGGTCATGCACTCGGGCCGCAGGCTCCTGGGGACCTACTTCCGGGTGGCCTTCTTTGGACAGGCAGCGGGGTTCTTCGAAGACGAAGATGGGAAGGAATACATCTACAAAGAGCCCAAGCTCACGCCTCTGTCAGAGATTTCTCAGAGACTCCTTAAACTTTACTCGGATAAATTTGGTTCCGAAAATGTCAAAATGATACAGGATTCTGGCAAGGTCAACCCGAAGGATCTGGACTCCAAGTTTGCCTACATCCAGGTGACCCACGTGACCCCATTCTTTGACGAAAAGGAGTTACAAGAGAGGAGAACAGAGTTTGAACGATGTCACAACATCCGGCGCTTCATGTTTGAGATGCCCTTCACCCAGACCGGGAAGAGGCAGGGTGGCGTGGAGGAGCAGTGTAAGCGGCGGACCATCCTGACAGCAATACACTGCTTCCCCTACGTGAAGAAGCGGATCCCTGTCATGTACCAGCACCACACTGACCTGAACCCCATTGAGGTGGCCATCGATGAAATGAGCAAGAAGGTGGCCGAGCTCCGCCAGCTCTGCTCGTCGGCTGAAGTGGATATGATCAAACTGCAGCTCAAACTGCAGGGCAGTGTGAGCGTCCAGGTCAATGCTGGTCCGCTAGCATATGCCCGAGCCTTCCTCGATGACACCAACACAAAAAGATACCCTGACAATAAGGTGAAACTGCTGAAGGAAGTTTTCAGGCAATTTGTGGAAGCTTGTGGTCAAGCCTTGGCAGTGAACGAGCGTCTCATTAAAGAAGACCAACTGGAGTACCAGGAAGAGATGAAGGCCAACTACAGGGAGATGGCCAAGGAGCTCTCCGACATCATGCGTGAGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TACAGGGAGATGGCCAAGGA
59.96
AGAGAGAGAGGGTGTCCAGC
60.32
144
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCAACTACAGGGAGATGGCC
59.82
AGAGAGAGAGGGTGTCCAGC
60.32
149
PCR template sequence:
CGAGCGTCTCATTAAAGAAGACCAACTGGAGTACCAGGAAGAGATGAAGGCCAACTACAGGGAGATGGCCAAGGAGCTCTCCGACATCATGCGTGAGCAGGCTACGGCCACTCAGAGGCAGATGTCGTTCACCAGTCGCTTCTCGAAGCCAACATCGCTACTGAGGTCTGCCTCACAGCGCTGGACACCCTCTCTCTCTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
16
Interacting miRNAs (#binding sites)
mmu-miR-382-5p(2), mmu-miR-137-3p(1), mmu-miR-429-3p(1), mmu-miR-709(1), mmu-miR-143-3p(1), mmu-miR-138-5p(1), mmu-miR-127-3p(1), mmu-miR-431-5p(1), mmu-miR-218-5p(1), mmu-miR-758-3p(1), mmu-miR-324-3p(1), mmu-miR-342-5p(1), mmu-miR-680(1), mmu-miR-1198-5p(1), mmu-miR-532-5p(1), mmu-miR-697(1)
siRNAs for circular RNA silencing
Junction sequence
CATGCGTGAGCAGGCTACGGCCACTC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCDOCK9_1964_ORF_1
1.2829
0.435938117
0.999997348
1941
ORF sequence:
ATGAAGAAAGTTTTTGACGTCTACCTGTGTTTCCTTCAAAAACACCAGTCAGAAATGGCTTTAAAAAACGTCTTTACTGCCTTAAGGTCTCTAATTTATAAGTTCCCCTCGGCGTTCTACGAGGGGCGGGCGGACATGTGTGCCTCCCTGTGCTATGAGGTCCTCAAGTGCTGCAACTCCAAGCTCAGTTCCATCCGGACGGAGGCCTCCCAGCTGCTCTACTTCCTGATGAGGAACAACTTCGACTACACAGGAAAGAAGTCTTTTGTTCGGACGCACTTACAGGTCATCATCTCTGTCAGCCAACTGATTGCAGATGTGGTTGGCATTGGAGGAACCAGATTCCAGCAGTCCTTGTCTATCATCAACAACTGTGCCAACAGCGACCGGATCATCAAGCACACCAGCTTTTCCTCTGATGTGAAAGATTTGACTAAGAGGATCCGCACAGTCCTGATGGCCACAGCCCAGATGAAGGAGCACGAGAACGACCCGGAGATGCTGGTGGACCTCCAGTACAGCCTGGCTAAGTCCTACGCCAGCACCCCTGAGCTCAGGAAGACGTGGCTAGACAGTATGGCGAGGATTCACGTTAAAAATGGGGACCTCTCAGAGGCGGCAATGTGCTATGTCCACGTGACAGCCTTGGTGGCAGAATATCTCACACGGAAAGGCATGTTCAGACAGGGGTGCACAGCCTTCAGGGTTATCACACCAAACATCGATGAAGAGGCTTCCATGATGGAAGACGTCGGCATGCAGGACGTCCATTTCAACGAGGATGTGCTGATGGAGCTGCTGGAGCAGTGTGCGGATGGACTTTGGAAGGCGGAGCGCTACGAGCTGATCGCTGACATCTATAAGCTCATCATCCCCATCTACGAAAAGCGGAGGGATTTCGAGAGACTAGCCCATCTGTATGACACGCTGCACCGCGCATACAGCAAAGTGACAGAGGTCATGCACTCGGGCCGCAGGCTCCTGGGGACCTACTTCCGGGTGGCCTTCTTTGGACAGGCAGCGGGGTTCTTCGAAGACGAAGATGGGAAGGAATACATCTACAAAGAGCCCAAGCTCACGCCTCTGTCAGAGATTTCTCAGAGACTCCTTAAACTTTACTCGGATAAATTTGGTTCCGAAAATGTCAAAATGATACAGGATTCTGGCAAGGTCAACCCGAAGGATCTGGACTCCAAGTTTGCCTACATCCAGGTGACCCACGTGACCCCATTCTTTGACGAAAAGGAGTTACAAGAGAGGAGAACAGAGTTTGAACGATGTCACAACATCCGGCGCTTCATGTTTGAGATGCCCTTCACCCAGACCGGGAAGAGGCAGGGTGGCGTGGAGGAGCAGTGTAAGCGGCGGACCATCCTGACAGCAATACACTGCTTCCCCTACGTGAAGAAGCGGATCCCTGTCATGTACCAGCACCACACTGACCTGAACCCCATTGAGGTGGCCATCGATGAAATGAGCAAGAAGGTGGCCGAGCTCCGCCAGCTCTGCTCGTCGGCTGAAGTGGATATGATCAAACTGCAGCTCAAACTGCAGGGCAGTGTGAGCGTCCAGGTCAATGCTGGTCCGCTAGCATATGCCCGAGCCTTCCTCGATGACACCAACACAAAAAGATACCCTGACAATAAGGTGAAACTGCTGAAGGAAGTTTTCAGGCAATTTGTGGAAGCTTGTGGTCAAGCCTTGGCAGTGAACGAGCGTCTCATTAAAGAAGACCAACTGGAGTACCAGGAAGAGATGAAGGCCAACTACAGGGAGATGGCCAAGGAGCTCTCCGACATCATGCGTGAGCAGGCTACGGCCACTCAGAGGCAGATGTCGTTCACCAGTCGCTTCTCGAAGCCAACATCGCTACTGAGGTCTGCCTCACAGCGCTGGACACCCTCTCTCTCTTCACACTGGCTTTTAAGAACCAGCTCCTAG
Peptide sequence:
MKKVFDVYLCFLQKHQSEMALKNVFTALRSLIYKFPSAFYEGRADMCASLCYEVLKCCNSKLSSIRTEASQLLYFLMRNNFDYTGKKSFVRTHLQVIISVSQLIADVVGIGGTRFQQSLSIINNCANSDRIIKHTSFSSDVKDLTKRIRTVLMATAQMKEHENDPEMLVDLQYSLAKSYASTPELRKTWLDSMARIHVKNGDLSEAAMCYVHVTALVAEYLTRKGMFRQGCTAFRVITPNIDEEASMMEDVGMQDVHFNEDVLMELLEQCADGLWKAERYELIADIYKLIIPIYEKRRDFERLAHLYDTLHRAYSKVTEVMHSGRRLLGTYFRVAFFGQAAGFFEDEDGKEYIYKEPKLTPLSEISQRLLKLYSDKFGSENVKMIQDSGKVNPKDLDSKFAYIQVTHVTPFFDEKELQERRTEFERCHNIRRFMFEMPFTQTGKRQGGVEEQCKRRTILTAIHCFPYVKKRIPVMYQHHTDLNPIEVAIDEMSKKVAELRQLCSSAEVDMIKLQLKLQGSVSVQVNAGPLAYARAFLDDTNTKRYPDNKVKLLKEVFRQFVEACGQALAVNERLIKEDQLEYQEEMKANYREMAKELSDIMREQATATQRQMSFTSRFSKPTSLLRSASQRWTPSLSSHWLLRTSS
IRESfinder result
IRESfinder score
0.358292194
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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