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mmu_circDnah8_2394
Basic information of circular RNA
PanCircBase ID:
mmu_circDnah8_2394
mm39_Chr. Position ID:
chr17|30981614|31013789|+
Gene name:
Dnah8
Transcript:
ENSMUST00000170651.2
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
15
Exon/intron indexes:
62,63,64,65,66,67,68,69,70,71,72,73,74,75,76
Exon/intron offsets:
0,2955,5158,7002,9156,10888,12305,16366,17082,19743,21422,22366,24504,28186,31992
Genomic length:
32175
Exon/intron sizes in nt:
131,154,165,227,119,104,177,168,216,138,128,172,156,156,183
Flanking exon/introns:
chr17:30980102-30981614|chr17:31013789-31019457
Splice length:
2394
Other database IDs:
CIRCpedia: MMU_CIRCpedia_227555, circAtlas: mmu-Dnah8_0086
Human Ortholog IDs:
Mature spliced Sequence:
ATCTCTCGGATCATTCGAACCTCCTGTGGGAACGCATTGCTGGTGGGTGTCGGTGGCTCAGGAAAGCAGAGCCTCTCAAAACTGGCCTCCTTTATTGCTGGGTATCAGATATTTCAGATAACACTAACCAGGTCTTACAACGTAAGCAACCTCATAGAAGACCTAAAGAATTTGTACAAAGTTGCTGGCGCGGAAGGCAAAGGCATCACCTTCATCTTTACGGACAATGAGATAAAAGATGAGGCGTTCCTGGAATACCTTAATAATCTGCTGTCTTCAGGGGAGATCTCCAATTTATTTGCCCGAGACGAGATGGATGAAATCACCCAAGGCCTGATATCGGTGATGAAGAGGGAGCTGCCTCGACACCCTCCCACCTTTGACAACCTGTATGAATACTTCATCACCAGATCCAGGAAGAATTTACATGTTGTTCTCTGCTTCTCCCCGGTTGGAGAGAAGTTCCGGGCCCGGTCCCTCAAATTCCCTGGCTTGATTTCAGGGTGCACCATGGACTGGTTCAGTCGCTGGCCCAAGGAGGCTCTAATCGCTGTGGCCTCATACTTCCTTTTAGATTATAACATTGTCTGCTCCATTGAGACTAAGAGGCATGTTGTAGAAACTATGGGGCTCTTTCATGACATGGTTTCTGAAAGCTGCGAGAATTACTTCCAAAGATACCGCCGAAGAGCCCACGTGACTCCCAAATCATATCTCTCATTTATAAATGGTTATAAAAGCATTTACACCGATAAGGTGAAATATATCAATGAACAAGCGGAACGGATGAATATCGGTCTCGACAAGCTGATGGAGGCGAGCGAATCTGTGGCTAAGCTCTCACAGGATCTCGCAGTGAAGGAGAAGGAACTGGCGGTGGCTTCCATTAAAGCAGACGAAGTCCTGGCAGAGGTCACAGTGAGTGCCCAGGCTTCAGCCAAAGTGAAAAACGAAGTCCAGGAAGTAAAAGATAAAGCTCAGAAAATTGTGGATGAAATTGACAGCGAGAAGGTGAAAGCAGAGACTAAGCTGGAGGCCGCCAAACCTGCCCTGGAAGAAGCAGAAGCAGCCCTGAATACCATCAAACCAAATGACATTGCCACAGTCAGGAAGCTTGCCAAACCACCACATCTCATTATGAGAATCATGGACTGTGTCCTGTTGCTGTTCCAAAAGAAAATCGATCCTGTTACCATGGACCCAGAAAAGCCCTGCTGCAAGCCATCATGGGGAGAGTCGTTAAAGCTGATGAGCGCCACCGGGTTCCTGTTCAGCCTGCAGCAGTTCCCCAAGGACACAATCAACGAGGAAACTGTTGAACTACTGCAGCCATATTTTAACATGGACGACTACACTTTTGAAAGTGCCAAAAAAGTGTGTGGCAACGTGGCTGGGCTGCTTTCCTGGACACTTGCTATGGTGATATTTTACGGCATCAACAGGGAAGTGTTGCCCTTGAAGGCAAACCTGGCCAAGCAGGAAGGCCGCTTGGCTGTGGCCAATGTGGAATTAGGGAAGGCCCAGGCGCTGCTGGACGAGAAGCAGGCTGAGCTGGATAAAGTGCAGGCCAAGTTTGACGCCGCGATGAAGGAGAAAATGGACCTGCTCAATGATGCCGACATGTGCAGGAAGAAGATGCAGGCAGCCTCCACGCTCATTGATGGCCTGAGTGGGGAGAAAGTCCGGTGGACCCAGCAAAGTAAGGAGTTCAAGACGCAGATTAATAGACTCGTAGGCGATGTTCTGCTCTGCACAGGCTTTCTCTCCTACCTCGGCCCCTTCAATCAGATATTTCGGAACTATTTGCTTAAAGACCAATGGGAGTTAGAGTTGAAAGCACGGAAAATTCCTTTCACTGAAAACCTGAATCTTATTGCAATGTTGGTGGACCCTCCAACAATTGGCGAGTGGGGCCTGCAGGGACTCCCTGGAGATGACTTGTCAATTCAGAATGGCATCATTGTGACAAAGGCCACCAGATACCCTCTGCTCATTGATCCCCAGACTCAGGGAAAAACGTGGATCAAATCGAAGGAAAAAGAAAACGACTTGCAGGTGACATCTCTGAACCACAAATATTTCCGCACACACCTGGAGGACAGCCTCTCGTTGGGTCGCCCCCTTCTCATCGAGGATATTCGAGAGGAGCTGGACCCAGCTCTGGATAATGTGCTGGAGAAGAACTTTATCAAATCAGGCACTGCTTTCAAGGTGAAAGTGGGTGACAAGGAATGTGACATCATGGACACGTTTAAACTTTACATCACCACGAAGTTACCAAACCCTGCCTTCACCCCTGAGATCAACGCCAAGACGTCCGTCATTGATTTCACTGTCACCATGAAGGGACTCGAGAACCAGTTACTCAGGAGAGTCATTCTCACAGAGAAACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGTCACCATGAAGGGACTCG
59.39
GGCCAGTTTTGAGAGGCTCT
59.96
148
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGTCACCATGAAGGGACTCG
59.39
AGGCCAGTTTTGAGAGGCTC
59.96
149
PCR template sequence:
CCCTGAGATCAACGCCAAGACGTCCGTCATTGATTTCACTGTCACCATGAAGGGACTCGAGAACCAGTTACTCAGGAGAGTCATTCTCACAGAGAAACAGATCTCTCGGATCATTCGAACCTCCTGTGGGAACGCATTGCTGGTGGGTGTCGGTGGCTCAGGAAAGCAGAGCCTCTCAAAACTGGCCTCCTTTATTGCTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
8
Interacting miRNAs (#binding sites)
mmu-let-7e-5p(1), mmu-miR-185-5p(1), mmu-miR-96-5p(1), mmu-miR-34b-5p(1), mmu-miR-705(1), mmu-miR-188-3p(1), mmu-miR-670-5p(1), mmu-miR-1904(1)
siRNAs for circular RNA silencing
Junction sequence
CACAGAGAAACAGATCTCTCGGATCA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCDNAH8_2394_ORF_1
1.168
0.35019913
1
4476
ORF sequence:
ATGGATGAAATCACCCAAGGCCTGATATCGGTGATGAAGAGGGAGCTGCCTCGACACCCTCCCACCTTTGACAACCTGTATGAATACTTCATCACCAGATCCAGGAAGAATTTACATGTTGTTCTCTGCTTCTCCCCGGTTGGAGAGAAGTTCCGGGCCCGGTCCCTCAAATTCCCTGGCTTGATTTCAGGGTGCACCATGGACTGGTTCAGTCGCTGGCCCAAGGAGGCTCTAATCGCTGTGGCCTCATACTTCCTTTTAGATTATAACATTGTCTGCTCCATTGAGACTAAGAGGCATGTTGTAGAAACTATGGGGCTCTTTCATGACATGGTTTCTGAAAGCTGCGAGAATTACTTCCAAAGATACCGCCGAAGAGCCCACGTGACTCCCAAATCATATCTCTCATTTATAAATGGTTATAAAAGCATTTACACCGATAAGGTGAAATATATCAATGAACAAGCGGAACGGATGAATATCGGTCTCGACAAGCTGATGGAGGCGAGCGAATCTGTGGCTAAGCTCTCACAGGATCTCGCAGTGAAGGAGAAGGAACTGGCGGTGGCTTCCATTAAAGCAGACGAAGTCCTGGCAGAGGTCACAGTGAGTGCCCAGGCTTCAGCCAAAGTGAAAAACGAAGTCCAGGAAGTAAAAGATAAAGCTCAGAAAATTGTGGATGAAATTGACAGCGAGAAGGTGAAAGCAGAGACTAAGCTGGAGGCCGCCAAACCTGCCCTGGAAGAAGCAGAAGCAGCCCTGAATACCATCAAACCAAATGACATTGCCACAGTCAGGAAGCTTGCCAAACCACCACATCTCATTATGAGAATCATGGACTGTGTCCTGTTGCTGTTCCAAAAGAAAATCGATCCTGTTACCATGGACCCAGAAAAGCCCTGCTGCAAGCCATCATGGGGAGAGTCGTTAAAGCTGATGAGCGCCACCGGGTTCCTGTTCAGCCTGCAGCAGTTCCCCAAGGACACAATCAACGAGGAAACTGTTGAACTACTGCAGCCATATTTTAACATGGACGACTACACTTTTGAAAGTGCCAAAAAAGTGTGTGGCAACGTGGCTGGGCTGCTTTCCTGGACACTTGCTATGGTGATATTTTACGGCATCAACAGGGAAGTGTTGCCCTTGAAGGCAAACCTGGCCAAGCAGGAAGGCCGCTTGGCTGTGGCCAATGTGGAATTAGGGAAGGCCCAGGCGCTGCTGGACGAGAAGCAGGCTGAGCTGGATAAAGTGCAGGCCAAGTTTGACGCCGCGATGAAGGAGAAAATGGACCTGCTCAATGATGCCGACATGTGCAGGAAGAAGATGCAGGCAGCCTCCACGCTCATTGATGGCCTGAGTGGGGAGAAAGTCCGGTGGACCCAGCAAAGTAAGGAGTTCAAGACGCAGATTAATAGACTCGTAGGCGATGTTCTGCTCTGCACAGGCTTTCTCTCCTACCTCGGCCCCTTCAATCAGATATTTCGGAACTATTTGCTTAAAGACCAATGGGAGTTAGAGTTGAAAGCACGGAAAATTCCTTTCACTGAAAACCTGAATCTTATTGCAATGTTGGTGGACCCTCCAACAATTGGCGAGTGGGGCCTGCAGGGACTCCCTGGAGATGACTTGTCAATTCAGAATGGCATCATTGTGACAAAGGCCACCAGATACCCTCTGCTCATTGATCCCCAGACTCAGGGAAAAACGTGGATCAAATCGAAGGAAAAAGAAAACGACTTGCAGGTGACATCTCTGAACCACAAATATTTCCGCACACACCTGGAGGACAGCCTCTCGTTGGGTCGCCCCCTTCTCATCGAGGATATTCGAGAGGAGCTGGACCCAGCTCTGGATAATGTGCTGGAGAAGAACTTTATCAAATCAGGCACTGCTTTCAAGGTGAAAGTGGGTGACAAGGAATGTGACATCATGGACACGTTTAAACTTTACATCACCACGAAGTTACCAAACCCTGCCTTCACCCCTGAGATCAACGCCAAGACGTCCGTCATTGATTTCACTGTCACCATGAAGGGACTCGAGAACCAGTTACTCAGGAGAGTCATTCTCACAGAGAAACAGATCTCTCGGATCATTCGAACCTCCTGTGGGAACGCATTGCTGGTGGGTGTCGGTGGCTCAGGAAAGCAGAGCCTCTCAAAACTGGCCTCCTTTATTGCTGGGTATCAGATATTTCAGATAACACTAACCAGGTCTTACAACGTAAGCAACCTCATAGAAGACCTAAAGAATTTGTACAAAGTTGCTGGCGCGGAAGGCAAAGGCATCACCTTCATCTTTACGGACAATGAGATAAAAGATGAGGCGTTCCTGGAATACCTTAATAATCTGCTGTCTTCAGGGGAGATCTCCAATTTATTTGCCCGAGACGAGATGGATGAAATCACCCAAGGCCTGATATCGGTGATGAAGAGGGAGCTGCCTCGACACCCTCCCACCTTTGACAACCTGTATGAATACTTCATCACCAGATCCAGGAAGAATTTACATGTTGTTCTCTGCTTCTCCCCGGTTGGAGAGAAGTTCCGGGCCCGGTCCCTCAAATTCCCTGGCTTGATTTCAGGGTGCACCATGGACTGGTTCAGTCGCTGGCCCAAGGAGGCTCTAATCGCTGTGGCCTCATACTTCCTTTTAGATTATAACATTGTCTGCTCCATTGAGACTAAGAGGCATGTTGTAGAAACTATGGGGCTCTTTCATGACATGGTTTCTGAAAGCTGCGAGAATTACTTCCAAAGATACCGCCGAAGAGCCCACGTGACTCCCAAATCATATCTCTCATTTATAAATGGTTATAAAAGCATTTACACCGATAAGGTGAAATATATCAATGAACAAGCGGAACGGATGAATATCGGTCTCGACAAGCTGATGGAGGCGAGCGAATCTGTGGCTAAGCTCTCACAGGATCTCGCAGTGAAGGAGAAGGAACTGGCGGTGGCTTCCATTAAAGCAGACGAAGTCCTGGCAGAGGTCACAGTGAGTGCCCAGGCTTCAGCCAAAGTGAAAAACGAAGTCCAGGAAGTAAAAGATAAAGCTCAGAAAATTGTGGATGAAATTGACAGCGAGAAGGTGAAAGCAGAGACTAAGCTGGAGGCCGCCAAACCTGCCCTGGAAGAAGCAGAAGCAGCCCTGAATACCATCAAACCAAATGACATTGCCACAGTCAGGAAGCTTGCCAAACCACCACATCTCATTATGAGAATCATGGACTGTGTCCTGTTGCTGTTCCAAAAGAAAATCGATCCTGTTACCATGGACCCAGAAAAGCCCTGCTGCAAGCCATCATGGGGAGAGTCGTTAAAGCTGATGAGCGCCACCGGGTTCCTGTTCAGCCTGCAGCAGTTCCCCAAGGACACAATCAACGAGGAAACTGTTGAACTACTGCAGCCATATTTTAACATGGACGACTACACTTTTGAAAGTGCCAAAAAAGTGTGTGGCAACGTGGCTGGGCTGCTTTCCTGGACACTTGCTATGGTGATATTTTACGGCATCAACAGGGAAGTGTTGCCCTTGAAGGCAAACCTGGCCAAGCAGGAAGGCCGCTTGGCTGTGGCCAATGTGGAATTAGGGAAGGCCCAGGCGCTGCTGGACGAGAAGCAGGCTGAGCTGGATAAAGTGCAGGCCAAGTTTGACGCCGCGATGAAGGAGAAAATGGACCTGCTCAATGATGCCGACATGTGCAGGAAGAAGATGCAGGCAGCCTCCACGCTCATTGATGGCCTGAGTGGGGAGAAAGTCCGGTGGACCCAGCAAAGTAAGGAGTTCAAGACGCAGATTAATAGACTCGTAGGCGATGTTCTGCTCTGCACAGGCTTTCTCTCCTACCTCGGCCCCTTCAATCAGATATTTCGGAACTATTTGCTTAAAGACCAATGGGAGTTAGAGTTGAAAGCACGGAAAATTCCTTTCACTGAAAACCTGAATCTTATTGCAATGTTGGTGGACCCTCCAACAATTGGCGAGTGGGGCCTGCAGGGACTCCCTGGAGATGACTTGTCAATTCAGAATGGCATCATTGTGACAAAGGCCACCAGATACCCTCTGCTCATTGATCCCCAGACTCAGGGAAAAACGTGGATCAAATCGAAGGAAAAAGAAAACGACTTGCAGGTGACATCTCTGAACCACAAATATTTCCGCACACACCTGGAGGACAGCCTCTCGTTGGGTCGCCCCCTTCTCATCGAGGATATTCGAGAGGAGCTGGACCCAGCTCTGGATAATGTGCTGGAGAAGAACTTTATCAAATCAGGCACTGCTTTCAAGGTGAAAGTGGGTGACAAGGAATGTGACATCATGGACACGTTTAAACTTTACATCACCACGAAGTTACCAAACCCTGCCTTCACCCCTGAGATCAACGCCAAGACGTCCGTCATTGATTTCACTGTCACCATGAAGGGACTCGAGAACCAGTTACTCAGGAGAGTCATTCTCACAGAGAAACAG
Peptide sequence:
MDEITQGLISVMKRELPRHPPTFDNLYEYFITRSRKNLHVVLCFSPVGEKFRARSLKFPGLISGCTMDWFSRWPKEALIAVASYFLLDYNIVCSIETKRHVVETMGLFHDMVSESCENYFQRYRRRAHVTPKSYLSFINGYKSIYTDKVKYINEQAERMNIGLDKLMEASESVAKLSQDLAVKEKELAVASIKADEVLAEVTVSAQASAKVKNEVQEVKDKAQKIVDEIDSEKVKAETKLEAAKPALEEAEAALNTIKPNDIATVRKLAKPPHLIMRIMDCVLLLFQKKIDPVTMDPEKPCCKPSWGESLKLMSATGFLFSLQQFPKDTINEETVELLQPYFNMDDYTFESAKKVCGNVAGLLSWTLAMVIFYGINREVLPLKANLAKQEGRLAVANVELGKAQALLDEKQAELDKVQAKFDAAMKEKMDLLNDADMCRKKMQAASTLIDGLSGEKVRWTQQSKEFKTQINRLVGDVLLCTGFLSYLGPFNQIFRNYLLKDQWELELKARKIPFTENLNLIAMLVDPPTIGEWGLQGLPGDDLSIQNGIIVTKATRYPLLIDPQTQGKTWIKSKEKENDLQVTSLNHKYFRTHLEDSLSLGRPLLIEDIREELDPALDNVLEKNFIKSGTAFKVKVGDKECDIMDTFKLYITTKLPNPAFTPEINAKTSVIDFTVTMKGLENQLLRRVILTEKQISRIIRTSCGNALLVGVGGSGKQSLSKLASFIAGYQIFQITLTRSYNVSNLIEDLKNLYKVAGAEGKGITFIFTDNEIKDEAFLEYLNNLLSSGEISNLFARDEMDEITQGLISVMKRELPRHPPTFDNLYEYFITRSRKNLHVVLCFSPVGEKFRARSLKFPGLISGCTMDWFSRWPKEALIAVASYFLLDYNIVCSIETKRHVVETMGLFHDMVSESCENYFQRYRRRAHVTPKSYLSFINGYKSIYTDKVKYINEQAERMNIGLDKLMEASESVAKLSQDLAVKEKELAVASIKADEVLAEVTVSAQASAKVKNEVQEVKDKAQKIVDEIDSEKVKAETKLEAAKPALEEAEAALNTIKPNDIATVRKLAKPPHLIMRIMDCVLLLFQKKIDPVTMDPEKPCCKPSWGESLKLMSATGFLFSLQQFPKDTINEETVELLQPYFNMDDYTFESAKKVCGNVAGLLSWTLAMVIFYGINREVLPLKANLAKQEGRLAVANVELGKAQALLDEKQAELDKVQAKFDAAMKEKMDLLNDADMCRKKMQAASTLIDGLSGEKVRWTQQSKEFKTQINRLVGDVLLCTGFLSYLGPFNQIFRNYLLKDQWELELKARKIPFTENLNLIAMLVDPPTIGEWGLQGLPGDDLSIQNGIIVTKATRYPLLIDPQTQGKTWIKSKEKENDLQVTSLNHKYFRTHLEDSLSLGRPLLIEDIREELDPALDNVLEKNFIKSGTAFKVKVGDKECDIMDTFKLYITTKLPNPAFTPEINAKTSVIDFTVTMKGLENQLLRRVILTEKQ
IRESfinder result
IRESfinder score
0.523667886
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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