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mmu_circDmxl2_2346
Basic information of circular RNA
PanCircBase ID:
mmu_circDmxl2_2346
mm39_Chr. Position ID:
chr9|54352666|54387749|-
Gene name:
Dmxl2
Transcript:
ENSMUST00000118163.8
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
12
Exon/intron indexes:
13,12,11,10,9,8,7,6,5,4,3,2
Exon/intron offsets:
0,989,5414,6219,12241,13471,15556,26809,27505,28454,32074,34957
Genomic length:
35083
Exon/intron sizes in nt:
12,26,94,27,22,40,17,50,00,00,00,00,00,00,00,000
Flanking exon/introns:
chr9:54335407-54352666|chr9:54387749-54408634
Splice length:
2346
Other database IDs:
CIRCpedia: MMU_CIRCpedia_22845, circAtlas: mmu-Dmxl2_0002
circAtlas: hsa-DMXL2_0004, CIRCpedia: HSA_CIRCpedia_356202
Human Ortholog IDs:
Mature spliced Sequence:
GCATATGGATCAGGCTGTGATATTGTTATTCTGGCGAGTGACTTTGAATGTGTGCAGATCATCCCTGGTGCTAAGCATGGGAACATCCAAGTCAGTTGTGTGGAATGCTCCAACCAGCATGGGAGAGTTGCAGCTTCATATGGGAATGCTGTGTGTATTTTTGAACCCCTGGGTGTAAATTCTCATAAGAGAAACAGTCAACTCAAGTGTCAGTGGCTTAAAACTGGACAGTTTTTTTTGAGTTCCGTGACATACAACTTAGCATGGGACCCTCAAGATAACAGATTGCTGACAGCAACGGATTCGATTCAGCTGTGGGCTCCTCCAGGCGGTGATATTCTAGAAGAGGAGGAAGATGTTGATAATAGAGCCCCTCCTGTTTTAAATGATTGGAAGTGCATCTGGCAGTGCAAAACCTCAGTGTCTGTACATCTGATGGAATGGTCTCCTGATGGTGAATACTTTGCCACTGCTGGAAAGGATGACTGTCTTCTGAAAGTCTGGTACCCTATGACTGGCTGGAAGTCTTCAATCATACCTCAAGATCCCCATGAAGTGAAGAGGAGACGGGCTTCCACTCAGTTCTCCTTTGTTTACTTGGCACACCCTCGAGCCGTGACAGGTTTCTCATGGCGGAAAACTAGCAAGTATATGCCCAGGGGCTCTGTCTGTAATGTCTTACTGACTTCATGTCATGATGGTGTGTGTCGGCTCTGGGCAGAAACATTGTTACCTGAAGACTGCCTTTTGGGTGAGCAGATTTGTGAGACCACTACCTCCAGCGTTGCCAGCAACCTCTCTTCTGCTGGGAAACACAAAGACAGGATCCAGCATGCTCTTGAGACAATACACCATTTGAAGAATTTAAGGAAAGGACAAAGGAGGTCTTCTGTTCTTGTAACTCACGCTGAACTGATGCCTGACAAGACTGCAACCCACGAGGTTCACAGACACATTTCTCACCATGCCAACGCACTGTGCCACTTTCACATCGCGGCGAGCATCAATCCTACTACAGATATTCCAAATGTCCTGGTTGGCACTGCATTTAATATTGATGATATCAATGGAGGATTTGTAGTTCATTGGTTAAATAACAAGGAATTTCATTTTACATCATCAACTGAAATATTTATGCACCAATTACGAAAACTTTCTGAAAAACAATTAGATCATGAAAGTGATGATGCAGATAGAGAAGATGAGGAGCGCTCACAGGACGAGAGAGAGAGGGGCTTACGCATGAAACTGGACCATGAATTATCTCTGGATAGAGAATCTGAGGCAGGTACAGGATCATCAGAACATGAAGATGGAGAACGAGAGGGAAGTCCTAGAACCCATCCACGACCTAGCATCTCAATGCCACTGCCTACAGTACTGCTGGACCGGAAGATTGAAACGCTGCTGACAGAGTGGAACAAGAACCCTGACATGTTATTCACGATACACCCTGTAGATGGAACTTTTCTAGTGTGGCATGTAAAGTATTTGGATGAATATAACCCTGGAATATTTAGACAAGTTCAGGTTTCTTTTTCCTCTCGGATTCCTGTTGCATTTCCCTCTGGGGACGCCAACTCTCTTAGTAAAAACATCATGATGTATGCTTGTGTGAATGCTACAAAAGATTCATACAACCCATCCCAGCAAGAGATGATGTCTGTAGATAGTCCCCATGGATCACAGCTACACTCTCCATCACACAGCACCGATATGAATATTTTAGCACCTACGGTAATGATGGTCTCTAAACACATAGATGGGTCTTTGAATCAGTGGGCAGTCACGTTTGCTGACAAGTCAGCCTTTACCACTGTTCTGACTGTGTCCCACAAATTCAGATACTGTGGTCACCGATTCCACCTCAATGACCTGGCATGCCATTCTGTTTTACCCCTCTTGCTGACATCTTCCCATCATAATGCTCTGTTGACTCCTGAATCAGACTGTCAGTGGGACTCCGACAGTAAAGTAAATAGATTAATAGATCCTGTAAAACACACAAAAGCTTCATCAAAACAGCCTCTGAGAAATGCAGCAACCCGTACATTTCATGACCCAAATGCAATCTACAGTGAACTTATTTTGTGGCGTGTAGACCCCATTGGACCTTTGTCATATACTGGAGGAGTGTCAGAATTGGCTCGAATTAACTCTTTACATACCTCAGCCTTCTCTAATGTGGCATGGCTTCCAACTCTTATTCCTAGTTACTGTCTTGGCACATACTGCAATTCTGCAAGTGCTTGCTTTGTTGCATCTGATGGCAAAAATCTAAGACTCTATCAAGCTGTGGTCGATGCAAGAAAATTATTAGATGAACTGTCAGACCCAGAAGCCTCA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ATCAAGCTGTGGTCGATGCA
60.04
TTCCCATGCTTAGCACCAGG
60.03
142
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CAAGCTGTGGTCGATGCAAG
59.83
TTCCCATGCTTAGCACCAGG
60.03
140
PCR template sequence:
TGCTTGCTTTGTTGCATCTGATGGCAAAAATCTAAGACTCTATCAAGCTGTGGTCGATGCAAGAAAATTATTAGATGAACTGTCAGACCCAGAAGCCTCAGCATATGGATCAGGCTGTGATATTGTTATTCTGGCGAGTGACTTTGAATGTGTGCAGATCATCCCTGGTGCTAAGCATGGGAACATCCAAGTCAGTTGTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
25
Interacting miRNAs (#binding sites)
mmu-miR-136-5p(2), mmu-miR-134-5p(1), mmu-let-7a-5p(1), mmu-miR-181a-5p(1), mmu-let-7e-5p(1), mmu-let-7b-5p(1), mmu-miR-34c-5p(1), mmu-miR-34a-5p(1), mmu-let-7c-5p(1), mmu-miR-146a-5p(1), mmu-miR-203-3p(1), mmu-let-7d-5p(1), mmu-miR-676-3p(1), mmu-miR-382-5p(1), mmu-miR-324-3p(1), mmu-miR-34b-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-802-5p(1), mmu-miR-377-3p(1), mmu-miR-129-5p(1), mmu-miR-673-5p(1), mmu-miR-3470b(1), mmu-miR-146b-5p(1), mmu-miR-323-3p(1), mmu-miR-181d-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CCCAGAAGCCTCAGCATATGGATCAG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRCDMXL2_2346_ORF_1
0.8305
0.025331384
1
4257
ORF sequence:
ATGGAATGGTCTCCTGATGGTGAATACTTTGCCACTGCTGGAAAGGATGACTGTCTTCTGAAAGTCTGGTACCCTATGACTGGCTGGAAGTCTTCAATCATACCTCAAGATCCCCATGAAGTGAAGAGGAGACGGGCTTCCACTCAGTTCTCCTTTGTTTACTTGGCACACCCTCGAGCCGTGACAGGTTTCTCATGGCGGAAAACTAGCAAGTATATGCCCAGGGGCTCTGTCTGTAATGTCTTACTGACTTCATGTCATGATGGTGTGTGTCGGCTCTGGGCAGAAACATTGTTACCTGAAGACTGCCTTTTGGGTGAGCAGATTTGTGAGACCACTACCTCCAGCGTTGCCAGCAACCTCTCTTCTGCTGGGAAACACAAAGACAGGATCCAGCATGCTCTTGAGACAATACACCATTTGAAGAATTTAAGGAAAGGACAAAGGAGGTCTTCTGTTCTTGTAACTCACGCTGAACTGATGCCTGACAAGACTGCAACCCACGAGGTTCACAGACACATTTCTCACCATGCCAACGCACTGTGCCACTTTCACATCGCGGCGAGCATCAATCCTACTACAGATATTCCAAATGTCCTGGTTGGCACTGCATTTAATATTGATGATATCAATGGAGGATTTGTAGTTCATTGGTTAAATAACAAGGAATTTCATTTTACATCATCAACTGAAATATTTATGCACCAATTACGAAAACTTTCTGAAAAACAATTAGATCATGAAAGTGATGATGCAGATAGAGAAGATGAGGAGCGCTCACAGGACGAGAGAGAGAGGGGCTTACGCATGAAACTGGACCATGAATTATCTCTGGATAGAGAATCTGAGGCAGGTACAGGATCATCAGAACATGAAGATGGAGAACGAGAGGGAAGTCCTAGAACCCATCCACGACCTAGCATCTCAATGCCACTGCCTACAGTACTGCTGGACCGGAAGATTGAAACGCTGCTGACAGAGTGGAACAAGAACCCTGACATGTTATTCACGATACACCCTGTAGATGGAACTTTTCTAGTGTGGCATGTAAAGTATTTGGATGAATATAACCCTGGAATATTTAGACAAGTTCAGGTTTCTTTTTCCTCTCGGATTCCTGTTGCATTTCCCTCTGGGGACGCCAACTCTCTTAGTAAAAACATCATGATGTATGCTTGTGTGAATGCTACAAAAGATTCATACAACCCATCCCAGCAAGAGATGATGTCTGTAGATAGTCCCCATGGATCACAGCTACACTCTCCATCACACAGCACCGATATGAATATTTTAGCACCTACGGTAATGATGGTCTCTAAACACATAGATGGGTCTTTGAATCAGTGGGCAGTCACGTTTGCTGACAAGTCAGCCTTTACCACTGTTCTGACTGTGTCCCACAAATTCAGATACTGTGGTCACCGATTCCACCTCAATGACCTGGCATGCCATTCTGTTTTACCCCTCTTGCTGACATCTTCCCATCATAATGCTCTGTTGACTCCTGAATCAGACTGTCAGTGGGACTCCGACAGTAAAGTAAATAGATTAATAGATCCTGTAAAACACACAAAAGCTTCATCAAAACAGCCTCTGAGAAATGCAGCAACCCGTACATTTCATGACCCAAATGCAATCTACAGTGAACTTATTTTGTGGCGTGTAGACCCCATTGGACCTTTGTCATATACTGGAGGAGTGTCAGAATTGGCTCGAATTAACTCTTTACATACCTCAGCCTTCTCTAATGTGGCATGGCTTCCAACTCTTATTCCTAGTTACTGTCTTGGCACATACTGCAATTCTGCAAGTGCTTGCTTTGTTGCATCTGATGGCAAAAATCTAAGACTCTATCAAGCTGTGGTCGATGCAAGAAAATTATTAGATGAACTGTCAGACCCAGAAGCCTCAGCATATGGATCAGGCTGTGATATTGTTATTCTGGCGAGTGACTTTGAATGTGTGCAGATCATCCCTGGTGCTAAGCATGGGAACATCCAAGTCAGTTGTGTGGAATGCTCCAACCAGCATGGGAGAGTTGCAGCTTCATATGGGAATGCTGTGTGTATTTTTGAACCCCTGGGTGTAAATTCTCATAAGAGAAACAGTCAACTCAAGTGTCAGTGGCTTAAAACTGGACAGTTTTTTTTGAGTTCCGTGACATACAACTTAGCATGGGACCCTCAAGATAACAGATTGCTGACAGCAACGGATTCGATTCAGCTGTGGGCTCCTCCAGGCGGTGATATTCTAGAAGAGGAGGAAGATGTTGATAATAGAGCCCCTCCTGTTTTAAATGATTGGAAGTGCATCTGGCAGTGCAAAACCTCAGTGTCTGTACATCTGATGGAATGGTCTCCTGATGGTGAATACTTTGCCACTGCTGGAAAGGATGACTGTCTTCTGAAAGTCTGGTACCCTATGACTGGCTGGAAGTCTTCAATCATACCTCAAGATCCCCATGAAGTGAAGAGGAGACGGGCTTCCACTCAGTTCTCCTTTGTTTACTTGGCACACCCTCGAGCCGTGACAGGTTTCTCATGGCGGAAAACTAGCAAGTATATGCCCAGGGGCTCTGTCTGTAATGTCTTACTGACTTCATGTCATGATGGTGTGTGTCGGCTCTGGGCAGAAACATTGTTACCTGAAGACTGCCTTTTGGGTGAGCAGATTTGTGAGACCACTACCTCCAGCGTTGCCAGCAACCTCTCTTCTGCTGGGAAACACAAAGACAGGATCCAGCATGCTCTTGAGACAATACACCATTTGAAGAATTTAAGGAAAGGACAAAGGAGGTCTTCTGTTCTTGTAACTCACGCTGAACTGATGCCTGACAAGACTGCAACCCACGAGGTTCACAGACACATTTCTCACCATGCCAACGCACTGTGCCACTTTCACATCGCGGCGAGCATCAATCCTACTACAGATATTCCAAATGTCCTGGTTGGCACTGCATTTAATATTGATGATATCAATGGAGGATTTGTAGTTCATTGGTTAAATAACAAGGAATTTCATTTTACATCATCAACTGAAATATTTATGCACCAATTACGAAAACTTTCTGAAAAACAATTAGATCATGAAAGTGATGATGCAGATAGAGAAGATGAGGAGCGCTCACAGGACGAGAGAGAGAGGGGCTTACGCATGAAACTGGACCATGAATTATCTCTGGATAGAGAATCTGAGGCAGGTACAGGATCATCAGAACATGAAGATGGAGAACGAGAGGGAAGTCCTAGAACCCATCCACGACCTAGCATCTCAATGCCACTGCCTACAGTACTGCTGGACCGGAAGATTGAAACGCTGCTGACAGAGTGGAACAAGAACCCTGACATGTTATTCACGATACACCCTGTAGATGGAACTTTTCTAGTGTGGCATGTAAAGTATTTGGATGAATATAACCCTGGAATATTTAGACAAGTTCAGGTTTCTTTTTCCTCTCGGATTCCTGTTGCATTTCCCTCTGGGGACGCCAACTCTCTTAGTAAAAACATCATGATGTATGCTTGTGTGAATGCTACAAAAGATTCATACAACCCATCCCAGCAAGAGATGATGTCTGTAGATAGTCCCCATGGATCACAGCTACACTCTCCATCACACAGCACCGATATGAATATTTTAGCACCTACGGTAATGATGGTCTCTAAACACATAGATGGGTCTTTGAATCAGTGGGCAGTCACGTTTGCTGACAAGTCAGCCTTTACCACTGTTCTGACTGTGTCCCACAAATTCAGATACTGTGGTCACCGATTCCACCTCAATGACCTGGCATGCCATTCTGTTTTACCCCTCTTGCTGACATCTTCCCATCATAATGCTCTGTTGACTCCTGAATCAGACTGTCAGTGGGACTCCGACAGTAAAGTAAATAGATTAATAGATCCTGTAAAACACACAAAAGCTTCATCAAAACAGCCTCTGAGAAATGCAGCAACCCGTACATTTCATGACCCAAATGCAATCTACAGTGAACTTATTTTGTGGCGTGTAGACCCCATTGGACCTTTGTCATATACTGGAGGAGTGTCAGAATTGGCTCGAATTAACTCTTTACATACCTCAGCCTTCTCTAATGTGGCATGGCTTCCAACTCTTATTCCTAGTTACTGTCTTGGCACATACTGCAATTCTGCAAGTGCTTGCTTTGTTGCATCTGATGGCAAAAATCTAAGACTCTATCAAGCTGTGGTCGATGCAAGAAAATTATTAGATGAACTGTCAGACCCAGAAGCCTCA
Peptide sequence:
MEWSPDGEYFATAGKDDCLLKVWYPMTGWKSSIIPQDPHEVKRRRASTQFSFVYLAHPRAVTGFSWRKTSKYMPRGSVCNVLLTSCHDGVCRLWAETLLPEDCLLGEQICETTTSSVASNLSSAGKHKDRIQHALETIHHLKNLRKGQRRSSVLVTHAELMPDKTATHEVHRHISHHANALCHFHIAASINPTTDIPNVLVGTAFNIDDINGGFVVHWLNNKEFHFTSSTEIFMHQLRKLSEKQLDHESDDADREDEERSQDERERGLRMKLDHELSLDRESEAGTGSSEHEDGEREGSPRTHPRPSISMPLPTVLLDRKIETLLTEWNKNPDMLFTIHPVDGTFLVWHVKYLDEYNPGIFRQVQVSFSSRIPVAFPSGDANSLSKNIMMYACVNATKDSYNPSQQEMMSVDSPHGSQLHSPSHSTDMNILAPTVMMVSKHIDGSLNQWAVTFADKSAFTTVLTVSHKFRYCGHRFHLNDLACHSVLPLLLTSSHHNALLTPESDCQWDSDSKVNRLIDPVKHTKASSKQPLRNAATRTFHDPNAIYSELILWRVDPIGPLSYTGGVSELARINSLHTSAFSNVAWLPTLIPSYCLGTYCNSASACFVASDGKNLRLYQAVVDARKLLDELSDPEASAYGSGCDIVILASDFECVQIIPGAKHGNIQVSCVECSNQHGRVAASYGNAVCIFEPLGVNSHKRNSQLKCQWLKTGQFFLSSVTYNLAWDPQDNRLLTATDSIQLWAPPGGDILEEEEDVDNRAPPVLNDWKCIWQCKTSVSVHLMEWSPDGEYFATAGKDDCLLKVWYPMTGWKSSIIPQDPHEVKRRRASTQFSFVYLAHPRAVTGFSWRKTSKYMPRGSVCNVLLTSCHDGVCRLWAETLLPEDCLLGEQICETTTSSVASNLSSAGKHKDRIQHALETIHHLKNLRKGQRRSSVLVTHAELMPDKTATHEVHRHISHHANALCHFHIAASINPTTDIPNVLVGTAFNIDDINGGFVVHWLNNKEFHFTSSTEIFMHQLRKLSEKQLDHESDDADREDEERSQDERERGLRMKLDHELSLDRESEAGTGSSEHEDGEREGSPRTHPRPSISMPLPTVLLDRKIETLLTEWNKNPDMLFTIHPVDGTFLVWHVKYLDEYNPGIFRQVQVSFSSRIPVAFPSGDANSLSKNIMMYACVNATKDSYNPSQQEMMSVDSPHGSQLHSPSHSTDMNILAPTVMMVSKHIDGSLNQWAVTFADKSAFTTVLTVSHKFRYCGHRFHLNDLACHSVLPLLLTSSHHNALLTPESDCQWDSDSKVNRLIDPVKHTKASSKQPLRNAATRTFHDPNAIYSELILWRVDPIGPLSYTGGVSELARINSLHTSAFSNVAWLPTLIPSYCLGTYCNSASACFVASDGKNLRLYQAVVDARKLLDELSDPEAS
IRESfinder result
IRESfinder score
0.622244086
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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